Gene/Protein Characteristic Table for KIAA0675
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Product ID ORK01989
Accession No AB014575
Description DAZ interacting zinc finger protein 3
Clone name hk02566
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4246 bp)
Predicted protein sequence (1217 aa)
Flexi ORF Clone FXC01989
Source Human adult brain
Rouge ID mKIAA0675 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4246 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 490 bp
Genome contig ID gi89161205f_109704388
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CACATGTACCCTAAAACTTAAAGTATAATAATAAT
Flanking genome sequence
(188538 - 188587)
----+----*----+----*----+----*----+----*----+----*
AAAAGAAAAAAAAAAGAAAGTAAAAAAAAAAAAAGAAGTGGATATTCACG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 f 109804388 109892924 32 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1217 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q86Y13 0 100.0 E3 ubiquitin-pr...
Homo sapiens
XP_001151742 0 98.9 zinc finger DAZ...
Pan troglodytes
XP_001503296 0 92.4 similar to E3 u...
Equus caballus
XP_535732 0 91.0 similar to Ubiq...
Canis lupus fam...
NP_001103487 0 83.2 DAZ interacting...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001841 1157 1196 PF00097 Zinc finger
HMMSmart IPR001841 1157 1196 SM00184 Zinc finger
ProfileScan IPR001841 1157 1197 PS50089 Zinc finger

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 136 HQINIGYYLTLLFLYGVALTE 156 PRIMARY 21
Expression profile
Description

RT-PCR
RT-PCR-ELISA
Experimental conditions
Primer_f CAGACTCCACGTTTTGCTACC
Primer_r TACACCACTCAAACAAGCAGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name GeneBridge 4
Primer_f CAGACTCCACGTTTTGCTACC
Primer_r TACACCACTCAAACAAGCAGC
PCR product length 139 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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