# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk02566.fasta.huge -Q ../query/KIAA0675.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0675, 1217 aa
 vs ./tmplib.23663 library

1986288 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.5356+/-0.00727; mu= 8.8844+/- 0.492
 mean_var=272.6212+/-64.548, 0's: 0 Z-trim: 9  B-trim: 52 in 1/39
 Lambda= 0.077677

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1810  ( 579 res)   fk03376                     ( 579)  211 37.5  0.0072


>>KIAA1810  ( 579 res)   fk03376                          (579 aa)
 initn: 160 init1: 160 opt: 211  Z-score: 143.4  bits: 37.5 E(): 0.0072
Smith-Waterman score: 211;  40.580% identity (69.565% similar) in 69 aa overlap (1145-1210:242-309)

         1120      1130      1140      1150      1160      1170    
KIAA06 HSPSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPC
                                     ..:.: .  .. :.::.:..   . . :::
KIAA18 YLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT-GAKRLPC
             220       230       240       250       260        270

         1180      1190      1200         1210                     
KIAA06 AHKFHAQCIRPWLMQQGTCPTCRLHVL---LPEEFPGHPSRQLPKI              
        : ::..:.: :...: ::::::. ::   :: . :  :                     
KIAA18 NHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQPP
              280       290       300       310       320       330

KIAA18 NFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGT
              340       350       360       370       380       390




1217 residues in 1 query   sequences
1986288 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:38 2008 done: Thu Dec 18 15:11:39 2008
 Total Scan time:  0.730 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]