hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-09514468/chunk_1/iprscan-20080502-09514468.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0675 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00184 39.7 4e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00184 1/1 1157 1196 .. 1 23 [] 39.7 4e-07 Alignments of top-scoring domains: SM00184: domain 1 of 1, from 1157 to 1196: score 39.7, E = 4e-07 *->CpICle......pvvlpCgH.FCr.Ci.........CPlC<-* C IC+e+ +++++ vlpC H+F+ +Ci+++ ++++CP+C KIAA0675 1157 CVICHEnlspenLSVLPCAHkFHAqCIrpwlmqqgtCPTC 1196 //