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Databases
Plant Genome Project
| CloverGarden | A database that provides the information on the genomes of Trifolium and on the genomic resources useful for genetics and genomics in Trifolium and other legume species. |
| CyanoBase | The genome database for cyanobacteria and photosynthetic bacteria; Synechocystis sp. strain PCC 6803, Anabaena sp. PCC 7120, Thermosynechococcus elongatus BP-1 and a green sulfur bacteria, Chlorobium tepidum TLS. |
| RhizoBase | The genome database for rhizobia; Meso Rhizobium loti MAFF303099, Brady Rhizobium japonicum USDA110, Sino Rhizobium meliloti 1021 and Rhizobium sp. NGR234 symbiotic plasmid and M. loti R7A symbiosis island. |
| Lotus japonicus Genome Sequencing Project | A model legume Lotus japonicus genome sequence project information |
| Tomato SBM Database | Tomato genome sequence project information |
| Codon Usage Database | Codon usage tables compiled from GenBank DNA sequence database |
| TACWeb | TAC vector information |
Plant cDNA Project
| Chlamydomonas EST Index | Chlamydomonas reinhardtii EST dataset |
| Lotus japonicus EST Index | Lotus japonicus (Miyakogusa) EST dataset |
| Arabidopsis EST Index | Arabidopsis thaliana EST dataset |
| Porphyra EST Index | Porphyra yezoensis (Susabi nori) EST dataset |
| Tomato EST Index | Solanum lycopersicum (Tomato) EST dataset |
Plant Genetic Information Project
| KATANA | Arabidopsis thaliana Integrated Database |
| KaPPA-View | Arabidopsis thaliana Metabolic Pathway Database |
| MiBASE | Solanum lycopersicum (Tomato) EST and Unigene database |
| KaFTom | Solanum lycopersicum (Tomato) Full-length sequence (HTC) and EST database |
| CoP | Plant co-expressed gene network database |
| RnR | Regulatory network research database for Arabidopsis thaliana T87 cultured cells |
Metabolome Project
| Komics | Metabolite MS spectral annotation database |
| MassBase | Metabolite MST database |
| MS-MS Fragment Viewer | MS/MS spectral database for flavonoid compounds |
Human cDNA Project
| HUGE | Database of human unidentified gene-encoded large proteins |
| NEDO(Kazusa) | Database of FLJ cDNA-encoded large proteins |
| ROUGE | Database of rodent unidentified gene-encoded large proteins |
| CREATE portal | This is the potal to the Collaboration of Regional Entities for the Advancement of Technological Excellence.
InGaP:A Database for Gene/Protein expression profiles using mKIAA cDNA microarray and anti-mKIAA antibodies. InCeP:A Database for Intracellular pathway based on mKIAA protein-protein interaction. |
| KOP | Database of human protein expression clones (Flexi ORF clones). |
Miscellaneousness
| Mouse DNA Microarray | Database of mouse DNA Microarray |
| DAGViz | GO analysis database for genes in eukaryotic genomes |
Computer software for genetic analysis
| Genotype Matrix Mapping | GMM Genotype Matrix Mapping: A Computer program for dedtection of QTL interactions |
| Polyans | Computer program for the typing polymorphic bands on electrophoresis gel |
| KAGIANA | Excel-based tool to retrieve genomic information and co-expressed genes in Arabidopsis thaliana |