Databases

Plant Genome Project

CloverGarden A database that provides the information on the genomes of Trifolium and on the genomic resources useful for genetics and genomics in Trifolium and other legume species.
CyanoBase The genome database for cyanobacteria and photosynthetic bacteria; Synechocystis sp. strain PCC 6803, Anabaena sp. PCC 7120, Thermosynechococcus elongatus BP-1 and a green sulfur bacteria, Chlorobium tepidum TLS.
RhizoBase The genome database for rhizobia; Meso Rhizobium loti MAFF303099, Brady Rhizobium japonicum USDA110, Sino Rhizobium meliloti 1021 and Rhizobium sp. NGR234 symbiotic plasmid and M. loti R7A symbiosis island.
Lotus japonicus Genome Sequencing Project A model legume Lotus japonicus genome sequence project information
Tomato SBM Database Tomato genome sequence project information
Codon Usage Database Codon usage tables compiled from GenBank DNA sequence database
TACWeb TAC vector information

Plant cDNA Project

Chlamydomonas EST Index Chlamydomonas reinhardtii EST dataset
Lotus japonicus EST Index Lotus japonicus (Miyakogusa) EST dataset
Arabidopsis EST Index Arabidopsis thaliana EST dataset
Porphyra EST Index Porphyra yezoensis (Susabi nori) EST dataset
Tomato EST Index Solanum lycopersicum (Tomato) EST dataset

Plant Genetic Information Project

KATANA Arabidopsis thaliana Integrated Database
KaPPA-View Arabidopsis thaliana Metabolic Pathway Database
MiBASE Solanum lycopersicum (Tomato) EST and Unigene database
KaFTom Solanum lycopersicum (Tomato) Full-length sequence (HTC) and EST database
CoPPlant co-expressed gene network database
RnRRegulatory network research database for Arabidopsis thaliana T87 cultured cells

Metabolome Project

KomicsMetabolite MS spectral annotation database
MassBaseMetabolite MST database
MS-MS Fragment ViewerMS/MS spectral database for flavonoid compounds

Human cDNA Project

HUGE Database of human unidentified gene-encoded large proteins
NEDO(Kazusa) Database of FLJ cDNA-encoded large proteins
ROUGE Database of rodent unidentified gene-encoded large proteins
CREATE portal This is the potal to the Collaboration of Regional Entities for the Advancement of Technological Excellence.
InGaP:A Database for Gene/Protein expression profiles using mKIAA cDNA microarray and anti-mKIAA antibodies.
InCeP:A Database for Intracellular pathway based on mKIAA protein-protein interaction.
KOP Database of human protein expression clones (Flexi ORF clones).

Miscellaneousness

Mouse DNA Microarray Database of mouse DNA Microarray
DAGVizGO analysis database for genes in eukaryotic genomes

Computer software for genetic analysis

Genotype Matrix Mapping GMM Genotype Matrix Mapping: A Computer program for dedtection of QTL interactions
Polyans Computer program for the typing polymorphic bands on electrophoresis gel
KAGIANAExcel-based tool to retrieve genomic information and co-expressed genes in Arabidopsis thaliana
Supplimental data for our publications