Kazusa Tomato Genomics Database

KaTomicsDB is a portal website for the tomato genomics databases for DNA markers, SNP annotations, and genome sequences released from our research group. Refer to Shirasawa and Hirakawa (2013).

Tomato Marker DataBase

DNA markers, e.g., SNP and SSR, and genetic linkage maps in tomato

Tomato Functional SNP DataBase

SNP annotations based on the predicted genes in the tomato genome

Tomato SBM DataBase

Genome sequences for gene-rich regions within the tomato genome

Portal Sites

PGDBj http://pgdbj.jp/
SGN http://solgenomics.net/
eusol http://www.eu-sol.net/
Lat-SOL http://cnia.inta.gov.ar/lat-sol/
Plants Database http://plants.usda.gov/java/profile?symbol=SOLY2
PURDUE University http://www.hort.purdue.edu/rhodcv/hort410/tomat/tomat.htm
SGR http://solanaceae.plantbiology.msu.edu/

Genome databases

PlantGDB http://www.plantgdb.org/SlGDB/
TOMATOMICS http://bioinf.mind.meiji.ac.jp/tomatomics/
ISGP http://sol.kribb.re.kr/tomatogenome/
ISOL http://biosrv.cab.unina.it/isola/
Tomato SBM Database http://www.kazusa.or.jp/tomato_sbm/

DNA marker databases

Marker DB http://marker.kazusa.or.jp/tomato/
VegMarks http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/
PIP Database http://ibi.zju.edu.cn/pgl/pip/download.html
tomatomap.net http://www.tomatomap.net/
SolCAP http://solcap.msu.edu/
dbSNP http://www.ncbi.nlm.nih.gov/snp/?term=Solanum+lycopersicum&SITE=NcbiHome&submit=Go
Tomato SNP http://www-plb.ucdavis.edu/labs/maloof/tomatosnp/
gabiPD http://www.gabipd.org/projects/Pomamo/
Realtime QTL http://zamir.sgn.cornell.edu/Qtl/Html/home.htm

EST databases

MiBASE http://www.kazusa.or.jp/jsol/microtom/
KafTom http://www.pgb.kazusa.or.jp/kaftom/
SolEST http://biosrv.cab.unina.it/solestdb/
TrichOME http://www.planttrichome.org/trichomedb/estbyspecies_detail.jsp?species=Solanum%20lycopersicum
DFCI http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=tomato

Gene expression databases

TomPLEX http://www.plexdb.org/plex.php?database=Tomato
SGED http://www.jcvi.org/potato/
Functional Genomics DB http://ted.bti.cornell.edu/
DATFAP http://cgi-www.daimi.au.dk/cgi-chili/datfap/frontdoor.py
PlantTFDB http://planttfdb.cbi.pku.edu.cn/index.php?sp=Sly

Metabolome databases

KaPPA-View4 SOL http://kpv.kazusa.or.jp/kpv4-sol/
MassBase http://webs2.kazusa.or.jp/massbase/

Plant material databases

BreeDB https://www.eu-sol.wur.nl/
ECPGR http://documents.plant.wur.nl/cgn/pgr/tomato/
TGRC http://tgrc.ucdavis.edu/
TOMATOMA http://tomatoma.nbrp.jp/index.jsp
Tomato mutagenesis http://zamir.sgn.cornell.edu/mutants/
LycoTILL http://www.agrobios.it/tilling/

Others

Functional SNP DB http://plant1.kazusa.or.jp/tomato/
GMDD http://gmdd.shgmo.org/event/view/113
Solanaceae Source http://www.nhm.ac.uk/research-curation/research/projects/solanaceaesource/
TGC http://tgc.ifas.ufl.edu/

Contact

2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818 JAPAN

F markerdb at kazusa.or.jp