Kazusa Tomato Genomics Database

KaTomicsDB is a portal website for the tomato genomics databases for DNA markers, SNP annotations, and genome sequences released from our research group. Refer to Shirasawa and Hirakawa (2013).

Tomato Marker DataBase

DNA markers, e.g., SNP and SSR, and genetic linkage maps in tomato

Tomato Functional SNP DataBase

SNP annotations based on the predicted genes in the tomato genome

Tomato SBM DataBase

Genome sequences for gene-rich regions within the tomato genome

Links

Portal Sites

http://pgdbj.jp/

http://solgenomics.net/

http://www.eu-sol.net/

http://cnia.inta.gov.ar/lat-sol/

Plants Database

http://www.hort.purdue.edu/rhodcv/hort410/tomat/tomat.htm

http://solanaceae.plantbiology.msu.edu/

Genome databases

http://www.plantgdb.org/SlGDB/

http://bioinf.mind.meiji.ac.jp/tomatomics/

http://sol.kribb.re.kr/tomatogenome/

http://biosrv.cab.unina.it/isola/

http://www.kazusa.or.jp/tomato_sbm/

DNA marker databases

http://marker.kazusa.or.jp/tomato/

http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/

http://ibi.zju.edu.cn/pgl/pip/download.html

http://www.tomatomap.net/

http://solcap.msu.edu/

http://www.ncbi.nlm.nih.gov/snp/?term=Solanum+lycopersicum&SITE=NcbiHome&submit=Go

http://www-plb.ucdavis.edu/labs/maloof/tomatosnp/

http://www.gabipd.org/projects/Pomamo/

http://zamir.sgn.cornell.edu/Qtl/Html/home.htm

EST databases

http://www.kazusa.or.jp/jsol/microtom/

http://www.pgb.kazusa.or.jp/kaftom/

http://biosrv.cab.unina.it/solestdb/

http://www.planttrichome.org/trichomedb/estbyspecies_detail.jsp?species=Solanum%20lycopersicum

http://compbio.dfci.harvard.edu/cgi-bin/tgi/gimain.pl?gudb=tomato

Gene expression databases

http://www.plexdb.org/plex.php?database=Tomato

http://www.jcvi.org/potato/

http://ted.bti.cornell.edu/

http://cgi-www.daimi.au.dk/cgi-chili/datfap/frontdoor.py

http://planttfdb.cbi.pku.edu.cn/index.php?sp=Sly

Metabolome databases

http://kpv.kazusa.or.jp/kpv4-sol/

http://webs2.kazusa.or.jp/massbase/

Plant material databases

https://www.eu-sol.wur.nl/

http://documents.plant.wur.nl/cgn/pgr/tomato/

http://tgrc.ucdavis.edu/

http://tomatoma.nbrp.jp/index.jsp

http://zamir.sgn.cornell.edu/mutants/

http://www.agrobios.it/tilling/

Others

http://plant1.kazusa.or.jp/tomato/

http://gmdd.shgmo.org/event/view/113

http://www.nhm.ac.uk/research-curation/research/projects/solanaceaesource/

http://tgc.ifas.ufl.edu/

Contact

2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818 JAPAN

F markerdb at kazusa.or.jp