Gene/Protein Characteristic Table for FLJ00146

Description

Product ID:	ORK06048
Accession No.:	AK074075
Alias Name:
Clone Name:	sh05065 [Vector Info]
Source:	Human spleen

Features of the cloned DNA sequence	Description

Length: 5493
Physical map
Restiction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the predicted protein sequence	Description

Length: 522

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAB84901	2.5e-207	100.0	FLJ00146 protei...	Homo sapiens
EAW71228	2.8e-207	100.0	hCG2013435, iso...	Homo sapiens
EAW71233	1.6e-203	100.0	hCG2013435, iso...	Homo sapiens
EAW71231	2.4e-203	100.0	hCG2013435, iso...	Homo sapiens
AAH27939	2.7e-203	99.8	SNED1 protein [...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AK074062	4e-128	93.8	FLJ00133
AB160984	1.4e-05	39.5	KIAA0811
AB011537	3.8e-05	25.1	KIAA0813
D87469	7.6e-05	48.1	KIAA0279
AB076400	0.00019	36.5	KIAA1989

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR003962 90 99 PR00014 Fibronectin

IPR003962 300 310 PR00014 Fibronectin

IPR003962 322 340 PR00014 Fibronectin

IPR003962 340 354 PR00014 Fibronectin

IPR001438 444 455 PR00010 Type II EGF-like signature

IPR001438 456 463 PR00010 Type II EGF-like signature

IPR001438 464 474 PR00010 Type II EGF-like signature

IPR001438 475 481 PR00010 Type II EGF-like signature

HMMPfam IPR006209 3 34 PF00008 EGF-like domain

IPR006209 41 72 PF00008 EGF-like domain

IPR003961 76 157 PF00041 Fibronectin

IPR003961 175 258 PF00041 Fibronectin

IPR003961 274 356 PF00041 Fibronectin

IPR006209 448 479 PF00008 EGF-like domain

HMMSmart IPR001881 1 35 SM00179 EGF-like calcium-binding

IPR006210 2 35 SM00181 Type I EGF

IPR001881 39 73 SM00179 EGF-like calcium-binding

IPR006210 40 73 SM00181 Type I EGF

IPR003961 76 161 SM00060 Fibronectin

IPR003961 175 257 SM00060 Fibronectin

IPR003961 274 355 SM00060 Fibronectin

IPR006210 447 480 SM00181 Type I EGF

IPR001881 448 480 SM00179 EGF-like calcium-binding

ProfileScan IPR000742 3 34 PS50026 EGF-like domain

IPR000742 448 479 PS50026 EGF-like domain

ScanRegExp IPR006209 23 34 PS00022 EGF-like domain

IPR006209 61 72 PS00022 EGF-like domain

IPR006209 61 72 PS01186 EGF-like domain

IPR006209 468 479 PS00022 EGF-like domain

IPR006209 468 483 PS01186 EGF-like domain

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR003962	90	99	PR00014	Fibronectin
IPR003962	300	310	PR00014	Fibronectin
IPR003962	322	340	PR00014	Fibronectin
IPR003962	340	354	PR00014	Fibronectin
IPR001438	444	455	PR00010	Type II EGF-like signature
IPR001438	456	463	PR00010	Type II EGF-like signature
IPR001438	464	474	PR00010	Type II EGF-like signature
IPR001438	475	481	PR00010	Type II EGF-like signature
HMMPfam	IPR006209	3	34	PF00008	EGF-like domain
IPR006209	41	72	PF00008	EGF-like domain
IPR003961	76	157	PF00041	Fibronectin
IPR003961	175	258	PF00041	Fibronectin
IPR003961	274	356	PF00041	Fibronectin
IPR006209	448	479	PF00008	EGF-like domain
HMMSmart	IPR001881	1	35	SM00179	EGF-like calcium-binding
IPR006210	2	35	SM00181	Type I EGF
IPR001881	39	73	SM00179	EGF-like calcium-binding
IPR006210	40	73	SM00181	Type I EGF
IPR003961	76	161	SM00060	Fibronectin
IPR003961	175	257	SM00060	Fibronectin
IPR003961	274	355	SM00060	Fibronectin
IPR006210	447	480	SM00181	Type I EGF
IPR001881	448	480	SM00179	EGF-like calcium-binding
ProfileScan	IPR000742	3	34	PS50026	EGF-like domain
IPR000742	448	479	PS50026	EGF-like domain
ScanRegExp	IPR006209	23	34	PS00022	EGF-like domain
IPR006209	61	72	PS00022	EGF-like domain
IPR006209	61	72	PS01186	EGF-like domain
IPR006209	468	479	PS00022	EGF-like domain
IPR006209	468	483	PS01186	EGF-like domain

Method	From	To	amino acid sequence
-	-	-	-

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	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO