hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/shimazu/full/sh/sh05065/interpro/cnk_1/seq.in
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Query:  sh05065  522

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FN3      Fibronectin type 3 domain                      101.5    9.8e-26   3
EGF      Epidermal growth factor-like domain.            70.2    2.6e-16   3
EGF_CA   Calcium-binding EGF-like domain                 27.1    0.00073   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/3       2    35 ..     1    32 []    28.4  0.00096
EGF_CA     1/3       1    35 [.     1    34 []    16.2    0.016
EGF        2/3      40    73 ..     1    32 []    21.7      0.1
EGF_CA     2/3      39    73 ..     1    34 []     8.2     0.16
FN3        1/3      76   161 ..     1    69 []    24.0    0.021
FN3        2/3     175   257 ..     1    69 []    32.5  5.9e-05
FN3        3/3     274   355 ..     1    69 []    49.6  4.1e-10
EGF        3/3     447   480 ..     1    32 []    36.1  4.9e-06
EGF_CA     3/3     448   480 ..     1    34 []    19.3   0.0068

Alignments of top-scoring domains:
EGF: domain 1 of 3, from 2 to 35: score 28.4, E = 0.00096
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C+++pC++G     G+C ++++ y C Cp + + g +Ce   
     sh05065     2    ACDssPCQHG-----GRCEsgggAYLCvCP-ESFFGyHCE    35   

EGF_CA: domain 1 of 3, from 1 to 35: score 16.2, E = 0.016
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                        D C+++pCq+GG   +C+ + G Y C Cp+ + + +Ce   
     sh05065     1    --DACdssPCQHGG---RCESgGGAYLCvCPESFFgYHCE    35   

EGF: domain 2 of 3, from 40 to 73: score 21.7, E = 0.1
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                      +C ++pC+       G C+ +++s++C+C+  Gytg+ C    
     sh05065    40    PCFssPCGGR-----GYCLasngSHSCtCK-VGYTGeDCA    73   

EGF_CA: domain 2 of 3, from 39 to 73: score 8.2, E = 0.16
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                        D C ++pC+  G    C  + GS +C+C+ Gyt+  C    
     sh05065    39    --DPCfssPCGGRG---YCLAsNGSHSCtCKVGYTgEDCA    73   

FN3: domain 1 of 3, from 76 to 161: score 24.0, E = 0.021
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv
                        pP+    l+ + v ++       v++sW+pP+++      +++ v
     sh05065    76    LFPPTA---LKMERVEES------GVSISWNPPngpaarqmldgyAV 113  

                   gYr..................ytltgLkPgaepwteYefrVrAvngndaG
                   +Y++++++ ++++ ++++++++ l  L +g      Y+++V  v +n++ 
     sh05065   114 TYVssdgsyrrtdfvdrtrssHQLQALAAG----RAYNISVFSVKRNSNN 159  

                   eg<-*
                        
     sh05065   160 KN    161  

FN3: domain 2 of 3, from 175 to 257: score 32.5, E = 5.9e-05
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY
                      P p+++   ++vt+vt++      +++++W      +   ++ +v+ 
     sh05065   175    PRPVEG---FEVTNVTAS------TISVQWALHrirhatvsgvRVSI 212  

                   r..................ytltgLkPgaepwteYefrVrAvngndaGeg
                   r ++  +++ ++++++++++t++ L Pg    ++Y+++++  +g  +Ge 
     sh05065   213 RhpealrdqatdvdrsvdrFTFRALLPG----KRYTIQLTTLSG-LRGEE 257  

                   <-*
                      
     sh05065     -     -    

FN3: domain 3 of 3, from 274 to 355: score 49.6, E = 4.1e-10
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.........ivgYr
                      P pP n   l++  vt+t      s+++ W++P +++  + ++++ +
     sh05065   274    PLPPAN---LTAARVTAT------SAHVVWDAPtpgslleayVINVT 311  

                   .................ytltgLkPgaepwteYefrVrAvngndaGeg<-
                   ++++++++ +++++  +yt+++L Pg     +Y+ +V+Av +++ G+   
     sh05065   312 tsqstksryvpngklasYTVRDLLPG----RRYQLSVIAVQSTELGPQ   355  

                   *
                    
     sh05065     -   -    

EGF: domain 3 of 3, from 447 to 480: score 36.1, E = 4.9e-06
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C+++pC+nG     GtC+++ + ++C+C  pG++g+rCe   
     sh05065   447    NCSenPCQNG-----GTCVpgadAHSCdCG-PGFKGrRCE    480  

EGF_CA: domain 3 of 3, from 448 to 480: score 19.3, E = 0.0068
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                          C+++pCqnGG   tC+ +    +C+C pG+ +r+Ce   
     sh05065   448    ----CsenPCQNGG---TCVPgADAHSCdCGPGFKgRRCE    480  

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