hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/shimazu/full/sh/sh05065/interpro/cnk_1/seq.in
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Query:  sh05065  522

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                    126.8    4.1e-34   3
EGF      EGF-like domain                                 88.2    1.6e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/3       3    34 ..     1    37 []    31.8  1.6e-05
EGF        2/3      41    72 ..     1    37 []    29.4  8.5e-05
fn3        1/3      76   157 ..     1    84 []    40.4  3.9e-08
fn3        2/3     175   258 ..     1    84 []    44.7    2e-09
fn3        3/3     274   356 ..     1    84 []    47.6  2.8e-10
EGF        3/3     448   479 ..     1    37 []    43.1  6.4e-09

Alignments of top-scoring domains:
EGF: domain 1 of 3, from 3 to 34: score 31.8, E = 1.6e-05
                   *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-*
                      C++   pC++gG+C ++++ y C Cp+      + G +C   
     sh05065     3    CDSS--PCQHGGRCESGGgaYLCVCPES-----FFGYHC    34   

EGF: domain 2 of 3, from 41 to 72: score 29.4, E = 8.5e-05
                   *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-*
                      C +   pC ++G C+ + ++++C C++G     ytG++C   
     sh05065    41    CFSS--PCGGRGYCLASNgsHSCTCKVG-----YTGEDC    72   

fn3: domain 1 of 3, from 76 to 157: score 40.4, E = 3.9e-08
                   *->PsaPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkngg
                      + +Pt l+ + v ++ +++sW+pp ++  +  ++gY vty  ++ +g
     sh05065    76    LFPPTALKMERVEESGVSISWNPPNgpaARQMLDGYAVTY-VSS-DG 120  

                   e.wneltvpgtttsytltgLkPgteYevrVqAvnggGGpeS<-*
                   +  ++  v++t +s++l+ L +g+ Y+++V +v+++    S   
     sh05065   121 SyRRTDFVDRTRSSHQLQALAAGRAYNISVFSVKRN----S    157  

fn3: domain 2 of 3, from 175 to 258: score 44.7, E = 2e-09
                   *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew
                      P +++++ vt+vt+++++++W   +  +++++g +v+ R +     +
     sh05065   175    PRPVEGFEVTNVTASTISVQWALHRiRHATVSGVRVSIR-HPEALRD 220  

                   neltvpgtttsytltgLkPgteYevrVqAvnggG..GpeS<-*
                   +  +v+++ +++t++ L Pg +Y++++++++  G +G+e    
     sh05065   221 QATDVDRSVDRFTFRALLPGKRYTIQLTTLS--GlrGEEH    258  

fn3: domain 3 of 3, from 274 to 356: score 47.6, E = 2.8e-10
                   *->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpknggewn
                      P +P nlt+  vt+ts+++ W++pt+++ ++ Y + +  ++ +   +
     sh05065   274    PLPPANLTAARVTATSAHVVWDAPTPGSLLEAYVINV-TTSQST--K 317  

                   eltvpgttt.sytltgLkPgteYevrVqAvnggG.GpeS<-*
                   ++ vp+ +  syt+++L Pg++Y+++V+Av     Gp     
     sh05065   318 SRYVPNGKLaSYTVRDLLPGRRYQLSVIAVQSTElGPQH    356  

EGF: domain 3 of 3, from 448 to 479: score 43.1, E = 6.4e-09
                   *->CspnngpCsngGtCvdtp..ytCeCppGdyfllytGkrC<-*
                      Cs+n  pC+ngGtCv++ + ++C+C pG     ++G+rC   
     sh05065   448    CSEN--PCQNGGTCVPGAdaHSCDCGPG-----FKGRRC    479  

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