Gene/Protein Characteristic Table for FLJ00133

Description

Product ID:	ORK05090
Accession No.:	AK074062
Alias Name:
Clone Name:	sh02303 [Vector Info]
Source:	Human spleen

Features of the cloned DNA sequence	Description

Length: 5282
Physical map
Restiction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the predicted protein sequence	Description

Length: 1282

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAB84888	100.0	FLJ00133 protei...	Homo sapiens
EAW71232	100.0	hCG2013435, iso...	Homo sapiens
Q8TER0	100.0	Sushi, nidogen ...	Homo sapiens
Q5ZQU0	83.7	Sushi, nidogen ...	Rattus norvegicus
AAI45887	83.3	Sushi, nidogen ...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AK074075	1e-113	93.8	FLJ00146
AB053450	6.9e-23	29.1	KIAA1776
AB058677	2.6e-19	29.1	KIAA1781
AB011537	6.2e-19	28.8	KIAA0813
AB011538	1.2e-17	27.7	KIAA0814

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR001438 180 191 PR00010 Type II EGF-like signature

IPR001438 310 317 PR00010 Type II EGF-like signature

IPR001438 508 518 PR00010 Type II EGF-like signature

IPR001438 519 525 PR00010 Type II EGF-like signature

HMMPfam IPR010362 37 127 PF06119 NIDO

IPR006209 141 177 PF00008 EGF-like domain

IPR006209 184 215 PF00008 EGF-like domain

IPR006209 222 253 PF00008 EGF-like domain

IPR006209 260 291 PF00008 EGF-like domain

IPR006209 302 333 PF00008 EGF-like domain

IPR006209 414 445 PF00008 EGF-like domain

IPR006209 453 484 PF00008 EGF-like domain

IPR006209 492 523 PF00008 EGF-like domain

IPR006209 530 561 PF00008 EGF-like domain

IPR000436 567 620 PF00084 Sushi domain/SCR domain/CCP module

IPR006209 626 657 PF00008 EGF-like domain

IPR006209 664 695 PF00008 EGF-like domain

IPR006209 702 733 PF00008 EGF-like domain

IPR006209 740 771 PF00008 EGF-like domain

IPR003961 775 856 PF00041 Fibronectin

IPR003961 874 957 PF00041 Fibronectin

IPR003961 973 1055 PF00041 Fibronectin

IPR006209 1180 1211 PF00008 EGF-like domain

HMMSmart IPR003886 1 129 SM00539 Nidogen

IPR006210 140 178 SM00181 Type I EGF

IPR001881 141 178 SM00179 EGF-like calcium-binding

IPR001881 180 216 SM00179 EGF-like calcium-binding

IPR006210 183 216 SM00181 Type I EGF

IPR006210 221 254 SM00181 Type I EGF

IPR001881 222 254 SM00179 EGF-like calcium-binding

IPR001881 256 292 SM00179 EGF-like calcium-binding

IPR006210 259 292 SM00181 Type I EGF

IPR001881 300 334 SM00179 EGF-like calcium-binding

IPR006210 301 334 SM00181 Type I EGF

IPR006210 340 369 SM00181 Type I EGF

IPR006210 376 410 SM00181 Type I EGF

IPR001881 403 446 SM00179 EGF-like calcium-binding

IPR006210 413 446 SM00181 Type I EGF

IPR006210 452 485 SM00181 Type I EGF

IPR001881 453 485 SM00179 EGF-like calcium-binding

IPR001881 488 524 SM00179 EGF-like calcium-binding

IPR006210 491 524 SM00181 Type I EGF

IPR006210 529 562 SM00181 Type I EGF

IPR001881 530 562 SM00179 EGF-like calcium-binding

IPR000436 567 620 SM00032 Sushi domain/SCR domain/CCP module

IPR001881 622 658 SM00179 EGF-like calcium-binding

IPR006210 625 658 SM00181 Type I EGF

IPR001881 660 696 SM00179 EGF-like calcium-binding

IPR006210 663 696 SM00181 Type I EGF

IPR001881 698 734 SM00179 EGF-like calcium-binding

IPR006210 701 734 SM00181 Type I EGF

IPR001881 738 772 SM00179 EGF-like calcium-binding

IPR006210 739 772 SM00181 Type I EGF

IPR003961 775 860 SM00060 Fibronectin

IPR003961 874 956 SM00060 Fibronectin

IPR003961 973 1054 SM00060 Fibronectin

IPR006210 1179 1212 SM00181 Type I EGF

IPR001881 1180 1212 SM00179 EGF-like calcium-binding

ProfileScan NULL 134 762 PS50311 NULL

NULL 180 216 PS50034 NULL

IPR000742 184 215 PS50026 EGF-like domain

NULL 256 292 PS50034 NULL

IPR000742 260 291 PS50026 EGF-like domain

IPR000742 302 333 PS50026 EGF-like domain

IPR000742 414 445 PS50026 EGF-like domain

IPR000742 453 484 PS50026 EGF-like domain

NULL 488 524 PS50034 NULL

IPR000742 492 523 PS50026 EGF-like domain

IPR000742 530 561 PS50026 EGF-like domain

NULL 622 658 PS50034 NULL

IPR000742 626 657 PS50026 EGF-like domain

NULL 660 696 PS50034 NULL

IPR000742 664 695 PS50026 EGF-like domain

IPR000742 702 733 PS50026 EGF-like domain

IPR000742 1180 1211 PS50026 EGF-like domain

ScanRegExp IPR006209 166 177 PS00022 EGF-like domain

IPR006209 166 177 PS01186 EGF-like domain

IPR006209 204 215 PS00022 EGF-like domain

IPR006209 204 215 PS01186 EGF-like domain

IPR006209 242 253 PS00022 EGF-like domain

IPR006209 242 253 PS01186 EGF-like domain

IPR001881 256 280 PS01187 EGF-like calcium-binding

IPR000152 271 282 PS00010 Aspartic acid and asparagine hydroxylation site

IPR006209 280 291 PS00022 EGF-like domain

IPR006209 280 291 PS01186 EGF-like domain

IPR000152 313 324 PS00010 Aspartic acid and asparagine hydroxylation site

IPR006209 322 333 PS00022 EGF-like domain

IPR006209 322 333 PS01186 EGF-like domain

IPR006209 357 368 PS00022 EGF-like domain

IPR006209 357 368 PS01186 EGF-like domain

IPR006209 434 445 PS00022 EGF-like domain

IPR006209 434 445 PS01186 EGF-like domain

IPR006209 473 484 PS00022 EGF-like domain

IPR006209 512 523 PS00022 EGF-like domain

IPR006209 512 523 PS01186 EGF-like domain

IPR000152 541 552 PS00010 Aspartic acid and asparagine hydroxylation site

IPR006209 550 561 PS00022 EGF-like domain

IPR006209 550 561 PS01186 EGF-like domain

IPR001881 622 646 PS01187 EGF-like calcium-binding

IPR000152 637 648 PS00010 Aspartic acid and asparagine hydroxylation site

IPR006209 646 657 PS00022 EGF-like domain

IPR006209 646 657 PS01186 EGF-like domain

IPR001881 660 684 PS01187 EGF-like calcium-binding

IPR000152 675 686 PS00010 Aspartic acid and asparagine hydroxylation site

IPR006209 684 695 PS00022 EGF-like domain

IPR006209 684 695 PS01186 EGF-like domain

IPR006209 722 733 PS00022 EGF-like domain

IPR006209 760 771 PS00022 EGF-like domain

IPR006209 760 771 PS01186 EGF-like domain

IPR006209 1200 1211 PS00022 EGF-like domain

IPR006209 1200 1215 PS01186 EGF-like domain

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001438	180	191	PR00010	Type II EGF-like signature
IPR001438	310	317	PR00010	Type II EGF-like signature
IPR001438	508	518	PR00010	Type II EGF-like signature
IPR001438	519	525	PR00010	Type II EGF-like signature
HMMPfam	IPR010362	37	127	PF06119	NIDO
IPR006209	141	177	PF00008	EGF-like domain
IPR006209	184	215	PF00008	EGF-like domain
IPR006209	222	253	PF00008	EGF-like domain
IPR006209	260	291	PF00008	EGF-like domain
IPR006209	302	333	PF00008	EGF-like domain
IPR006209	414	445	PF00008	EGF-like domain
IPR006209	453	484	PF00008	EGF-like domain
IPR006209	492	523	PF00008	EGF-like domain
IPR006209	530	561	PF00008	EGF-like domain
IPR000436	567	620	PF00084	Sushi domain/SCR domain/CCP module
IPR006209	626	657	PF00008	EGF-like domain
IPR006209	664	695	PF00008	EGF-like domain
IPR006209	702	733	PF00008	EGF-like domain
IPR006209	740	771	PF00008	EGF-like domain
IPR003961	775	856	PF00041	Fibronectin
IPR003961	874	957	PF00041	Fibronectin
IPR003961	973	1055	PF00041	Fibronectin
IPR006209	1180	1211	PF00008	EGF-like domain
HMMSmart	IPR003886	1	129	SM00539	Nidogen
IPR006210	140	178	SM00181	Type I EGF
IPR001881	141	178	SM00179	EGF-like calcium-binding
IPR001881	180	216	SM00179	EGF-like calcium-binding
IPR006210	183	216	SM00181	Type I EGF
IPR006210	221	254	SM00181	Type I EGF
IPR001881	222	254	SM00179	EGF-like calcium-binding
IPR001881	256	292	SM00179	EGF-like calcium-binding
IPR006210	259	292	SM00181	Type I EGF
IPR001881	300	334	SM00179	EGF-like calcium-binding
IPR006210	301	334	SM00181	Type I EGF
IPR006210	340	369	SM00181	Type I EGF
IPR006210	376	410	SM00181	Type I EGF
IPR001881	403	446	SM00179	EGF-like calcium-binding
IPR006210	413	446	SM00181	Type I EGF
IPR006210	452	485	SM00181	Type I EGF
IPR001881	453	485	SM00179	EGF-like calcium-binding
IPR001881	488	524	SM00179	EGF-like calcium-binding
IPR006210	491	524	SM00181	Type I EGF
IPR006210	529	562	SM00181	Type I EGF
IPR001881	530	562	SM00179	EGF-like calcium-binding
IPR000436	567	620	SM00032	Sushi domain/SCR domain/CCP module
IPR001881	622	658	SM00179	EGF-like calcium-binding
IPR006210	625	658	SM00181	Type I EGF
IPR001881	660	696	SM00179	EGF-like calcium-binding
IPR006210	663	696	SM00181	Type I EGF
IPR001881	698	734	SM00179	EGF-like calcium-binding
IPR006210	701	734	SM00181	Type I EGF
IPR001881	738	772	SM00179	EGF-like calcium-binding
IPR006210	739	772	SM00181	Type I EGF
IPR003961	775	860	SM00060	Fibronectin
IPR003961	874	956	SM00060	Fibronectin
IPR003961	973	1054	SM00060	Fibronectin
IPR006210	1179	1212	SM00181	Type I EGF
IPR001881	1180	1212	SM00179	EGF-like calcium-binding
ProfileScan	NULL	134	762	PS50311	NULL
NULL	180	216	PS50034	NULL
IPR000742	184	215	PS50026	EGF-like domain
NULL	256	292	PS50034	NULL
IPR000742	260	291	PS50026	EGF-like domain
IPR000742	302	333	PS50026	EGF-like domain
IPR000742	414	445	PS50026	EGF-like domain
IPR000742	453	484	PS50026	EGF-like domain
NULL	488	524	PS50034	NULL
IPR000742	492	523	PS50026	EGF-like domain
IPR000742	530	561	PS50026	EGF-like domain
NULL	622	658	PS50034	NULL
IPR000742	626	657	PS50026	EGF-like domain
NULL	660	696	PS50034	NULL
IPR000742	664	695	PS50026	EGF-like domain
IPR000742	702	733	PS50026	EGF-like domain
IPR000742	1180	1211	PS50026	EGF-like domain
ScanRegExp	IPR006209	166	177	PS00022	EGF-like domain
IPR006209	166	177	PS01186	EGF-like domain
IPR006209	204	215	PS00022	EGF-like domain
IPR006209	204	215	PS01186	EGF-like domain
IPR006209	242	253	PS00022	EGF-like domain
IPR006209	242	253	PS01186	EGF-like domain
IPR001881	256	280	PS01187	EGF-like calcium-binding
IPR000152	271	282	PS00010	Aspartic acid and asparagine hydroxylation site
IPR006209	280	291	PS00022	EGF-like domain
IPR006209	280	291	PS01186	EGF-like domain
IPR000152	313	324	PS00010	Aspartic acid and asparagine hydroxylation site
IPR006209	322	333	PS00022	EGF-like domain
IPR006209	322	333	PS01186	EGF-like domain
IPR006209	357	368	PS00022	EGF-like domain
IPR006209	357	368	PS01186	EGF-like domain
IPR006209	434	445	PS00022	EGF-like domain
IPR006209	434	445	PS01186	EGF-like domain
IPR006209	473	484	PS00022	EGF-like domain
IPR006209	512	523	PS00022	EGF-like domain
IPR006209	512	523	PS01186	EGF-like domain
IPR000152	541	552	PS00010	Aspartic acid and asparagine hydroxylation site
IPR006209	550	561	PS00022	EGF-like domain
IPR006209	550	561	PS01186	EGF-like domain
IPR001881	622	646	PS01187	EGF-like calcium-binding
IPR000152	637	648	PS00010	Aspartic acid and asparagine hydroxylation site
IPR006209	646	657	PS00022	EGF-like domain
IPR006209	646	657	PS01186	EGF-like domain
IPR001881	660	684	PS01187	EGF-like calcium-binding
IPR000152	675	686	PS00010	Aspartic acid and asparagine hydroxylation site
IPR006209	684	695	PS00022	EGF-like domain
IPR006209	684	695	PS01186	EGF-like domain
IPR006209	722	733	PS00022	EGF-like domain
IPR006209	760	771	PS00022	EGF-like domain
IPR006209	760	771	PS01186	EGF-like domain
IPR006209	1200	1211	PS00022	EGF-like domain
IPR006209	1200	1215	PS01186	EGF-like domain

Method	From	To	amino acid sequence
-	-	-	-

Back to the homepage of this database

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO