PAIP1 ORF clone pFN21AE5549

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE5549

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Clone info.

Species

human

Clone Name

pFN21AE5549 Sequence (with vector) Restriction Map

Product ID

FHC15383

ORF Sequence

DNA sequence (1200 bp)
Protein sequence (400 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE5549

Symbol

PAIP1

Description

poly(A) binding protein interacting protein 1, transcript variant 2

Original Clone ID

oc95549

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1200 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 400 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS47204.1 1e-162 100.0 PAIP1 CCDS3947.1 4.3e-159 100.0 PAIP1 CCDS3948.1 2e-148 100.0 PAIP1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR009818 45 61 PF07145 Ataxin-2 IPR003890 81 297 PF02854 MIF4G-like HMMSmart IPR003890 80 297 SM00543 MIF4G-like
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_877590 400 605184 100.0 100.0 NP_006442 479 605184 100.0 98.0 XP_016864445 367 605184 100.0 91.8 NP_899152 367 605184 100.0 91.8 XP_005248287 367 605184 100.0 91.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE5549 Download

>KIEE5549  1200 bp
ATGTCGGACGGTTTCGATCGGGCCCCAGAGCAAACGAGGCCCCTGAGAGCTCCACCTAGT
TCACAGGATAAAATCCCACAGCAGAACTCGGAGTCAGCAATGGCTAAGCCCCAGGTGGTT
GTAGCTCCTGTATTAATGTCTAAGCTGTCTGTGAATGCCCCTGAATTTTACCCTTCAGGT
TATTCTTCCAGTTACACAGAATCCTATGAGGATGGTTGTGAGGATTATCCTACTCTATCA
GAATATGTTCAGGATTTTTTGAATCATCTTACAGAGCAGCCTGGCAGTTTTGAAACTGAA
ATTGAACAGTTTGCAGAGACCCTGAATGGTTGTGTTACAACAGATGATGCTTTGCAAGAA
CTTGTGGAACTCATCTATCAACAGGCCACATCTATCCCAAATTTCTCTTATATGGGAGCT
CGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGC
CAATTGCTACTTCAAAGATGTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGG
GATGAAGTTACTCGAAAACGATTTCATGCATTTGTACTCTTTCTGGGAGAACTTTATCTT
AACCTGGAGATCAAGGGAACAAATGGACAGGTTACAAGAGCAGATATTCTTCAGGTTGGT
CTTCGAGAATTGCTGAATGCCCTGTTTTCTAATCCTATGGATGACAATTTAATTTGTGCA
GTAAAATTGTTAAAGTTGACAGGATCAGTTTTGGAAGATGCTTGGAAGGAAAAAGGAAAG
ATGGATATGGAAGAAATTATTCAGAGAATTGAAAACGTTGTCCTAGATGCAAACTGCAGT
AGAGATGTAAAACAGATGCTCTTGAAGCTTGTAGAACTCCGGTCAAGTAACTGGGGCAGA
GTCCATGCAACTTCAACATATAGAGAAGCAACACCAGAAAATGATCCTAACTACTTTATG
AATGAACCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCAGCTGATCCAGATTAC
CAAGAGAAATACCAAGAATTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAAAAT
GGAACAGATTTATCCGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAGATGGAC
CCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAG

ORF Protein

Cloned ORF protein sequence for pFN21AE5549 Download

>KIEE5549  400 aa
MSDGFDRAPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSG
YSSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQE
LVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKG
DEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICA
VKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGR
VHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEEN
GTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE5549 Download

>pFN21AE5549  5905 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTCGGACGGTTTCGATCGGGCCCCAGAGCAAAC
GAGGCCCCTGAGAGCTCCACCTAGTTCACAGGATAAAATCCCACAGCAGAACTCGGAGTC
AGCAATGGCTAAGCCCCAGGTGGTTGTAGCTCCTGTATTAATGTCTAAGCTGTCTGTGAA
TGCCCCTGAATTTTACCCTTCAGGTTATTCTTCCAGTTACACAGAATCCTATGAGGATGG
TTGTGAGGATTATCCTACTCTATCAGAATATGTTCAGGATTTTTTGAATCATCTTACAGA
GCAGCCTGGCAGTTTTGAAACTGAAATTGAACAGTTTGCAGAGACCCTGAATGGTTGTGT
TACAACAGATGATGCTTTGCAAGAACTTGTGGAACTCATCTATCAACAGGCCACATCTAT
CCCAAATTTCTCTTATATGGGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAAT
TAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGGACTGAATATGA
AGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGAAAACGATTTCATGCATTTGT
ACTCTTTCTGGGAGAACTTTATCTTAACCTGGAGATCAAGGGAACAAATGGACAGGTTAC
AAGAGCAGATATTCTTCAGGTTGGTCTTCGAGAATTGCTGAATGCCCTGTTTTCTAATCC
TATGGATGACAATTTAATTTGTGCAGTAAAATTGTTAAAGTTGACAGGATCAGTTTTGGA
AGATGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAAAA
CGTTGTCCTAGATGCAAACTGCAGTAGAGATGTAAAACAGATGCTCTTGAAGCTTGTAGA
ACTCCGGTCAAGTAACTGGGGCAGAGTCCATGCAACTTCAACATATAGAGAAGCAACACC
AGAAAATGATCCTAACTACTTTATGAATGAACCAACATTTTATACATCTGATGGTGTTCC
TTTCACTGCAGCTGATCCAGATTACCAAGAGAAATACCAAGAATTACTTGAAAGAGAGGA
CTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCCGGGGCTGGTGATCCATACTT
GGATGATATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTT
GGAATCAGAGCGTAAGCGAAAACAGGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCC
TCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAG
CTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTT
CGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGA
AAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGC
TGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAG
ATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAA
TGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATC
CGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGT
GGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGG
AAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGC
CTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTG
GGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTT
CGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTA
TTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAAT
GACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGA
GAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACA
ACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACT
CGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACC
ACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACT
CTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTT
CTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGT
GGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTT
ATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATA
GGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGG
TATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAA
AGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGG
CGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGA
GGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCG
TGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGG
GAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTC
GCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCG
GTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCA
CTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGT
GGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAG
TTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCG
GTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATC
CTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTT
TGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAG
GAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAG
TGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTA
AAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTC
TGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAA
ATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATG
CGTCCGGCGTAGAGGATCGAGATCT