IRX2 ORF clone pFN21AB5805

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AB5805

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Clone info.

Species

human

Clone Name

pFN21AB5805 Sequence (with vector) Restriction Map

Product ID

FHC11704

ORF Sequence

DNA sequence (1413 bp)
Protein sequence (471 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIBB5805

Symbol

IRX2

Alias : IRXA2

Description

iroquois homeobox 2, transcript variant 1

Original Clone ID

cs00505

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1413 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 471 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS3868.1 5.1e-84 100.0 IRX2 CCDS58462.1 1.9e-26 51.8 IRX5 CCDS10751.1 2.5e-26 51.8 IRX5 CCDS10750.1 4.1e-15 37.9 IRX3 CCDS34132.1 9.4e-12 37.6 IRX1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR001356 118 174 PF00046 Homeobox HMMSmart IPR001356 114 179 SM00389 Homeobox IPR003893 322 339 SM00548 Iroquois-class homeodomain protein ProfileScan IPR001356 112 175 PS50071 Homeobox
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011512281 471 606198 100.0 100.0 NP_001127694 471 606198 100.0 100.0 NP_150366 471 606198 100.0 100.0 NP_001239126 482 606195,611174 51.8 86.0 NP_005844 483 606195,611174 51.8 86.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB5805 Download

>KIBB5805  1413 bp
ATGTCCTACCCGCAGGGCTACCTGTACCAGGCGCCCGGCTCGCTGGCGCTCTACTCGTGC
CCGGCCTACGGCGCGTCGGCTTTGGCGGCTCCGCGCAGCGAGGAGCTGGCGCGCTCGGCG
TCGGGCTCGGCGTTCAGCCCCTACCCGGGCTCGGCGGCCTTCACGGCGCAGGCGGCCACC
GGCTTCGGGAGCCCGCTGCAGTACTCGGCCGACGCCGCCGCCGCCGCCGCCGGCTTCCCG
TCCTACATGGGCGCACCCTACGACGCGCACACCACCGGCATGACCGGCGCCATCAGCTAC
CACCCGTACGGCAGCGCGGCCTACCCGTACCAGCTCAACGACCCCGCGTACCGCAAGAAC
GCCACGCGGGACGCCACGGCCACTCTCAAGGCCTGGCTCAACGAGCACCGCAAGAACCCC
TACCCCACCAAGGGCGAGAAGATCATGCTAGCCATCATCACCAAGATGACCCTCACCCAG
GTCTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAAGAAGGAGAACAAGATGACCTGG
GCCCCGAGAAACAAAAGCGAAGATGAGGACGAGGACGAGGGCGACGCTACCAGAAGCAAG
GACGAGAGTCCCGACAAGGCGCAGGAGGGCACGGAGACCTCGGCAGAGGACGAAGGGATC
AGCCTGCACGTGGACTCGCTCACGGATCACTCGTGCTCGGCCGAGTCGGACGGGGAGAAG
CTTCCGTGCCGCGCCGGGGACCCCCTGTGCGAATCGGGCTCGGAGTGCAAGGACAAGTAT
GACGACCTGGAGGACGACGAGGACGACGACGAGGAGGGCGAGCGGGGCCTGGCGCCGCCC
AAGCCCGTGACCTCGTCGCCGCTTACCGGCTTGGAGGCGCCGCTGCTGAGCCCCCCGCCC
GAGGCCGCGCCCCGCGGTGGCCGCAAGACGCCCCAGGGCAGCCGGACGTCTCCGGGCGCG
CCGCCCCCCGCCAGCAAGCCCAAGCTGTGGTCGCTGGCCGAGATCGCCACGTCGGACCTC
AAGCAGCCGAGCCTGGGCCCGGGCTGCGGGCCACCGGGGCTGCCCGCGGCCGCCGCGCCG
GCCTCAACCGGGGCACCGCCAGGAGGCTCGCCCTACCCTGCCTCGCCGCTGCTGGGCCGC
CCCCTCTACTACACGTCGCCCTTCTACGGCAACTACACAAACTACGGGAACTTGAACGCG
GCGCTGCAGGGCCAGGGTCTCCTGCGGTACAACTCTGCGGCCGCGGCCCCCGGCGAGGCC
CTGCACACCGCGCCAAAGGCGGCCAGCGACGCGGGCAAGGCGGGCGCGCACCCGCTCGAG
TCCCACTACCGGTCCCCGGGCGGCGGCTACGAGCCCAAGAAAGATGCCAGCGAGGGCTGC
ACCGTGGTTGGCGGGGGCGTCCAGCCCTACCTA

ORF Protein

Cloned ORF protein sequence for pFN21AB5805 Download

>KIBB5805  471 aa
MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAAT
GFGSPLQYSADAAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRKN
ATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW
APRNKSEDEDEDEGDATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDGEK
LPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGLAPPKPVTSSPLTGLEAPLLSPPP
EAAPRGGRKTPQGSRTSPGAPPPASKPKLWSLAEIATSDLKQPSLGPGCGPPGLPAAAAP
ASTGAPPGGSPYPASPLLGRPLYYTSPFYGNYTNYGNLNAALQGQGLLRYNSAAAAPGEA
LHTAPKAASDAGKAGAHPLESHYRSPGGGYEPKKDASEGCTVVGGGVQPYL

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB5805 Download

>pFN21AB5805  6118 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGTCCTACCCGCAGGGCTACCTGTACCAGGCGCC
CGGCTCGCTGGCGCTCTACTCGTGCCCGGCCTACGGCGCGTCGGCTTTGGCGGCTCCGCG
CAGCGAGGAGCTGGCGCGCTCGGCGTCGGGCTCGGCGTTCAGCCCCTACCCGGGCTCGGC
GGCCTTCACGGCGCAGGCGGCCACCGGCTTCGGGAGCCCGCTGCAGTACTCGGCCGACGC
CGCCGCCGCCGCCGCCGGCTTCCCGTCCTACATGGGCGCACCCTACGACGCGCACACCAC
CGGCATGACCGGCGCCATCAGCTACCACCCGTACGGCAGCGCGGCCTACCCGTACCAGCT
CAACGACCCCGCGTACCGCAAGAACGCCACGCGGGACGCCACGGCCACTCTCAAGGCCTG
GCTCAACGAGCACCGCAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTAGCCAT
CATCACCAAGATGACCCTCACCCAGGTCTCCACCTGGTTCGCCAACGCGCGCCGGCGCCT
CAAGAAGGAGAACAAGATGACCTGGGCCCCGAGAAACAAAAGCGAAGATGAGGACGAGGA
CGAGGGCGACGCTACCAGAAGCAAGGACGAGAGTCCCGACAAGGCGCAGGAGGGCACGGA
GACCTCGGCAGAGGACGAAGGGATCAGCCTGCACGTGGACTCGCTCACGGATCACTCGTG
CTCGGCCGAGTCGGACGGGGAGAAGCTTCCGTGCCGCGCCGGGGACCCCCTGTGCGAATC
GGGCTCGGAGTGCAAGGACAAGTATGACGACCTGGAGGACGACGAGGACGACGACGAGGA
GGGCGAGCGGGGCCTGGCGCCGCCCAAGCCCGTGACCTCGTCGCCGCTTACCGGCTTGGA
GGCGCCGCTGCTGAGCCCCCCGCCCGAGGCCGCGCCCCGCGGTGGCCGCAAGACGCCCCA
GGGCAGCCGGACGTCTCCGGGCGCGCCGCCCCCCGCCAGCAAGCCCAAGCTGTGGTCGCT
GGCCGAGATCGCCACGTCGGACCTCAAGCAGCCGAGCCTGGGCCCGGGCTGCGGGCCACC
GGGGCTGCCCGCGGCCGCCGCGCCGGCCTCAACCGGGGCACCGCCAGGAGGCTCGCCCTA
CCCTGCCTCGCCGCTGCTGGGCCGCCCCCTCTACTACACGTCGCCCTTCTACGGCAACTA
CACAAACTACGGGAACTTGAACGCGGCGCTGCAGGGCCAGGGTCTCCTGCGGTACAACTC
TGCGGCCGCGGCCCCCGGCGAGGCCCTGCACACCGCGCCAAAGGCGGCCAGCGACGCGGG
CAAGGCGGGCGCGCACCCGCTCGAGTCCCACTACCGGTCCCCGGGCGGCGGCTACGAGCC
CAAGAAAGATGCCAGCGAGGGCTGCACCGTGGTTGGCGGGGGCGTCCAGCCCTACCTAGT
TTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAG
CTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGC
AATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGAT
GAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGT
GATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAAT
TGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAA
AACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCC
CTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTG
GCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGA
ACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAA
CCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGT
GTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACG
CTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTG
GATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATG
AGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAG
CAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACA
GAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATG
AGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACC
GCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTG
AATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACG
TTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGAC
TGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGG
TTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTG
GGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACT
ATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA
TTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATAC
GGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAA
AGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTG
ACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAA
GATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGC
TTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCAC
GCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAAC
CCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGG
TAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGT
ATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGA
CAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCT
CTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGA
TTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACG
CTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCT
TCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTG
GGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTG
TACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGT
TTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTT
TTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCC
ATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT