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SpecieshumanProduct IDFXC00166Cloning SiteSgfI-PmeISymbolLRCH1
Alias : CHDC1, NP81Descriptionleucine-rich repeats and calponin homology (CH) domain containing 1, transcript variant 2
Length: 2184 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 728 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS31972.1 2.6e-191 99.9 LRCH1 CCDS53866.1 6.4e-174 99.0 LRCH1 CCDS53865.1 1.9e-143 95.3 LRCH1 CCDS3330.1 3.1e-44 43.3 LRCH3 CCDS59175.1 3.7e-40 48.3 LRCH2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 121 141 PF00560 Leucine-rich repeat IPR001611 145 164 PF00560 Leucine-rich repeat IPR001715 579 683 PF00307 Calponin homology domain HMMSmart IPR003591 119 141 SM00369 Leucine-rich repeat IPR003591 142 165 SM00369 Leucine-rich repeat NULL 142 161 SM00364 NULL NULL 167 183 SM00364 NULL IPR003591 187 209 SM00369 Leucine-rich repeat NULL 187 206 SM00364 NULL IPR003591 210 233 SM00369 Leucine-rich repeat NULL 210 229 SM00364 NULL IPR003591 255 278 SM00369 Leucine-rich repeat IPR001715 578 687 SM00033 Calponin homology domain ProfileScan IPR001611 121 143 PS51450 Leucine-rich repeat IPR001611 144 166 PS51450 Leucine-rich repeat IPR001611 167 187 PS51450 Leucine-rich repeat IPR001611 189 210 PS51450 Leucine-rich repeat IPR001611 212 234 PS51450 Leucine-rich repeat IPR001611 257 278 PS51450 Leucine-rich repeat IPR001715 576 689 PS50021 Calponin homology domain
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 702 DLIGFCLVHILFIVLVYITYHWN 724 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_055931 728 610368 100.0 100.0 NP_001157685 696 610368 99.1 92.2 NP_001157683 763 610368 95.4 99.6 XP_016875972 731 610368 94.1 92.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA1016 Download>KIAA1016 2184 bp ATGGCGACGCCGGGAAGCGAACCCCAACCTTTCGTCCCGGCCCTTTCGGTAGCTACTCTG CACCCACTTCATCATCCCCACCACCACCACCACCACCATCAGCACCACGGAGGAACCGGC GCCCCCGGCGGGGCGGGTGGTGGCGGCGGTGGCAGCGGGGGCTTCAACCTGCCCTTGAAC CGGGGTCTGGAGCGCGCGCTTGAGGAGGCGGCCAACTCCGGGGGGCTGAACCTGAGCGCC AGGAAATTGAAGGAATTTCCCCGTACCGCAGCCCCCGGGCATGACCTCTCGGACACGGTG CAGGCAGACTTATCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTA TCACTGGAAATTCTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTT AATCTGCAGATGCTGACTTACCTGAACTTGAGTCGAAATCAGCTGTCCGCCCTGCCTGCC TGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAAGTAACAACAAACTTGGATCATTA CCAGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGCTGGATGTCAGCTGCAACGAGATC ACAGCGTTGCCCCAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGA AATTACCTTAAAGTTTTACCACAAGAACTAGTAGATCTTCCCTTGGTAAAGTTTGACTTT TCCTGCAACAAAGTGCTCGTGATTCCAATTTGTTTTAGAGAGATGAAGCAGCTGCAAGTG TTACTACTTGAGAATAACCCTCTGCAGTCTCCTCCAGCACAGATTTGCACAAAGGGCAAA GTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGATTAAGACAGCTGACTCCCTT TATCTCCACACCATGGAGAGGCCACATTTACACCAGCACGTGGAAGATGGCAAGAAGGAT TCTGATTCGGGAGTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACCGAGCCTTCT GACGAAGACACTGTTAGCCTCAATGTGCCAATGTCAAACATCATGGAAGAAGAACAGATC ATCAAGGAGGACTCGTGCCATCGCCTTAGCCCCGTTAAAGGGGAATTTCATCAGGAATTT CAACCGGAGCCTTCCCTTTTGGGTGACAGCACCAACTCAGGAGAAGAAAGAGACCAGTTT ACTGATAGAGCAGATGGTCTCCATTCGGAATTTATGAACTATAAGGCAAGGGCAGAAGAC TGTGAAGAGCTGTTACGGATAGAAGAGGATGTGCACTGGCAAACTGAGGGCATAATAAGT TCATCCAAAGATCAGGACATGGATATAGCAATGATCGAGCAGCTGAGAGAAGCAGTAGAT TTGCTGCAAGATCCCAATGGATTAAGCACAGATATTACAGAGAGAAGTGTTTTAAACCTA TATCCTATGGGATCAGCAGAAGCCTTAGAATTACAAGATTCTGCACTGAATGGTCAAATA CAGCTGGAGACATCTCCGGTGTGTGAGGTGCAAAGTGATCTAACATTACAGAGTAACGGG AGCCAGTATTCTCCAAATGAGATTAGAGAGAACTCCCCTGCAGTCTCTCCTACCACAAAC AGCACAGCTCCATTTGGCCTGAAGCCTCGATCAGTGTTTCTAAGACCTCAGAGAAATTTG GAATCTATAGACCCGCAGTTTACAATCCGGAGGAAAATGGAGCAGATGAGAGAAGAGAAA GAGCTGGTGGAACAACTTCGTGAGAGCATTGAGATGAGATTGAAGGTCAGTCTACACGAA GACCTGGGGGCAGCCCTCATGGATGGTGTCGTCCTCTGCCATCTGGTCAACCACATCCGC CCACGGTCGGTTGCAAGCATCCATGTCCCATCACCAGCGGTTCCCAAACTTAGCATGGCC AAATGCAGAAGAAATGTGGAAAACTTTTTGGAAGCGTGCCGAAAATTAGGAGTACCAGAG GCTGACCTCTGCTCTCCGTGTGACATCCTGCAGTTGGATTTTCGTCACATTCGAAAGACT GTTGACACTCTGCTGGCACTCGGGGAGAAAGCCCCACCACCAACTTCTGCCCTCCGCTCC AGGGACCTTATAGGCTTCTGTCTTGTCCATATTCTCTTTATAGTGCTGGTCTATATCACT TACCACTGGAATGCTCTGTCCGCA
Cloned ORF protein sequence for pF1KA1016 Download>KIAA1016 728 aa MATPGSEPQPFVPALSVATLHPLHHPHHHHHHHQHHGGTGAPGGAGGGGGGSGGFNLPLN RGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFV SLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSL PEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVDLPLVKFDF SCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTADSL YLHTMERPHLHQHVEDGKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNVPMSNIMEEEQI IKEDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEERDQFTDRADGLHSEFMNYKARAED CEELLRIEEDVHWQTEGIISSSKDQDMDIAMIEQLREAVDLLQDPNGLSTDITERSVLNL YPMGSAEALELQDSALNGQIQLETSPVCEVQSDLTLQSNGSQYSPNEIRENSPAVSPTTN STAPFGLKPRSVFLRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVSLHE DLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPE ADLCSPCDILQLDFRHIRKTVDTLLALGEKAPPPTSALRSRDLIGFCLVHILFIVLVYIT YHWNALSA
Nucleotide Sequence (with vector) for pF1KA1016 Download>pF1KA1016 5297 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGACGCCG GGAAGCGAACCCCAACCTTTCGTCCCGGCCCTTTCGGTAGCTACTCTGCACCCACTTCAT CATCCCCACCACCACCACCACCACCATCAGCACCACGGAGGAACCGGCGCCCCCGGCGGG GCGGGTGGTGGCGGCGGTGGCAGCGGGGGCTTCAACCTGCCCTTGAACCGGGGTCTGGAG CGCGCGCTTGAGGAGGCGGCCAACTCCGGGGGGCTGAACCTGAGCGCCAGGAAATTGAAG GAATTTCCCCGTACCGCAGCCCCCGGGCATGACCTCTCGGACACGGTGCAGGCAGACTTA TCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACTGGAAATT CTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTTAATCTGCAGATG CTGACTTACCTGAACTTGAGTCGAAATCAGCTGTCCGCCCTGCCTGCCTGCCTGTGTGGT CTGCCTCTCAAAGTCTTAATCGCAAGTAACAACAAACTTGGATCATTACCAGAAGAGATA GGTCAGCTCAAACAGTTAATGGAGCTGGATGTCAGCTGCAACGAGATCACAGCGTTGCCC CAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGAAATTACCTTAAA GTTTTACCACAAGAACTAGTAGATCTTCCCTTGGTAAAGTTTGACTTTTCCTGCAACAAA GTGCTCGTGATTCCAATTTGTTTTAGAGAGATGAAGCAGCTGCAAGTGTTACTACTTGAG AATAACCCTCTGCAGTCTCCTCCAGCACAGATTTGCACAAAGGGCAAAGTTCACATATTT AAGTATCTGAGCATACAAGCATGCCAGATTAAGACAGCTGACTCCCTTTATCTCCACACC ATGGAGAGGCCACATTTACACCAGCACGTGGAAGATGGCAAGAAGGATTCTGATTCGGGA GTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACCGAGCCTTCTGACGAAGACACT GTTAGCCTCAATGTGCCAATGTCAAACATCATGGAAGAAGAACAGATCATCAAGGAGGAC TCGTGCCATCGCCTTAGCCCCGTTAAAGGGGAATTTCATCAGGAATTTCAACCGGAGCCT TCCCTTTTGGGTGACAGCACCAACTCAGGAGAAGAAAGAGACCAGTTTACTGATAGAGCA GATGGTCTCCATTCGGAATTTATGAACTATAAGGCAAGGGCAGAAGACTGTGAAGAGCTG TTACGGATAGAAGAGGATGTGCACTGGCAAACTGAGGGCATAATAAGTTCATCCAAAGAT CAGGACATGGATATAGCAATGATCGAGCAGCTGAGAGAAGCAGTAGATTTGCTGCAAGAT CCCAATGGATTAAGCACAGATATTACAGAGAGAAGTGTTTTAAACCTATATCCTATGGGA TCAGCAGAAGCCTTAGAATTACAAGATTCTGCACTGAATGGTCAAATACAGCTGGAGACA TCTCCGGTGTGTGAGGTGCAAAGTGATCTAACATTACAGAGTAACGGGAGCCAGTATTCT CCAAATGAGATTAGAGAGAACTCCCCTGCAGTCTCTCCTACCACAAACAGCACAGCTCCA TTTGGCCTGAAGCCTCGATCAGTGTTTCTAAGACCTCAGAGAAATTTGGAATCTATAGAC CCGCAGTTTACAATCCGGAGGAAAATGGAGCAGATGAGAGAAGAGAAAGAGCTGGTGGAA CAACTTCGTGAGAGCATTGAGATGAGATTGAAGGTCAGTCTACACGAAGACCTGGGGGCA GCCCTCATGGATGGTGTCGTCCTCTGCCATCTGGTCAACCACATCCGCCCACGGTCGGTT GCAAGCATCCATGTCCCATCACCAGCGGTTCCCAAACTTAGCATGGCCAAATGCAGAAGA AATGTGGAAAACTTTTTGGAAGCGTGCCGAAAATTAGGAGTACCAGAGGCTGACCTCTGC TCTCCGTGTGACATCCTGCAGTTGGATTTTCGTCACATTCGAAAGACTGTTGACACTCTG CTGGCACTCGGGGAGAAAGCCCCACCACCAACTTCTGCCCTCCGCTCCAGGGACCTTATA GGCTTCTGTCTTGTCCATATTCTCTTTATAGTGCTGGTCTATATCACTTACCACTGGAAT GCTCTGTCCGCAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACC TGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGC TGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGG TTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTC TAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTC CCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACT GGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCG TGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAA GTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGAT CAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCT CCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGC TCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACC GACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCC ACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGG CTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAG AAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGC CCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGT CTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTC GCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCC TGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGG CTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAG CTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCG CAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCG AAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTT ATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGC CAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGA GCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATA CCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTAC CGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTG TAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCC CGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAG ACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGT AGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGT ATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTG ATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTAC GCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCA GTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCAC CTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGAT GGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACC CTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTT CGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAG CGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCG AGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAG CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGG CAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGC CGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC GAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC TCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC TGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCA AATATGTATCCGCTCAT
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