Gene/Protein Characteristic Table for KIAA0062
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Product ID ORK00389
Accession No D31887
Description solute carrier family 39 (zinc transporter), member 14, transcript variant 1
Clone name ha01020
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4573 bp)
Predicted protein sequence (531 aa)
Flexi ORF Clone FXC00389
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0062 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4573 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 2975 bp
Genome contig ID gi51511724f_22180763
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
ATTTGTAAGATTCTATAAATAAAGCTATATTCTGT
Flanking genome sequence
(155370 - 155419)
----+----*----+----*----+----*----+----*----+----*
AATTGTTGAGAATCCCACGGGTGATCATTTGCAATAAATGTGGATGTAAT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 8 f 22280763 22336131 9 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 531 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAH91293 0 97.9 hypothetical pr...
Pongo abelii
XP_001106660 1e-209 93.2 similar to solu...
Macaca mulatta
EAW63682 1.2e-209 100.0 solute carrier ...
Homo sapiens
BAG58625 4.7e-209 99.8 unnamed protein...
Homo sapiens
Q15043 4.7e-209 99.8 Zinc transporte...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB033091 1.3e-30 31.2 KIAA1265
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003689 190 522 PF02535 Zinc/iron permease

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 190 VEVWGYGLLCVTVISLCSLLGAS 212 PRIMARY 23
2 225 LLLYFIALAIGTLYSNALFQLIP 247 SECONDARY 23
3 262 KSAVVFGGFYLFFFTEKILKILL 284 SECONDARY 23
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 8
Experimental conditions
Panel name Stanford G3
Primer_f TGTCAGGATGCTCACTTGTTC
Primer_r CAGTGGGGAAGAGGAGGTCAA
PCR product length 207 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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