hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16190521/chunk_1/iprscan-20080501-16190521.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0062 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02535.12.ls ZIP Zinc transporter 238.4 1.5e-68 1 PF02535.12.fs ZIP Zinc transporter 235.8 8.8e-68 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02535.12.fs 1/2 190 305 .. 1 132 [. 72.6 1.2e-18 PF02535.12.ls 1/1 190 522 .. 1 360 [] 238.4 1.5e-68 PF02535.12.fs 2/2 365 522 .. 185 360 .] 163.2 6.2e-46 Alignments of top-scoring domains: PF02535.12.fs: domain 1 of 2, from 190 to 305: score 72.6, E = 1.2e-18 *->lllkiyaifallitsliglllplliprisklrpesrsskllsfllaF ++++ y+++ ++++sl++ll++ ++p ++k +++ll+++ a+ KIAA0062 190 VEVWGYGLLCVTVISLCSLLGASVVPFMKK----TFYKRLLLYFIAL 232 AaGvlLgtaFlHLLPealealesspclgslhgpwhefpfaglivllGffl A+G+l + a++ L+Pea++++ + + ++ +++ +v++Gf+l KIAA0062 233 AIGTLYSNALFQLIPEAFGFN--------PLEDYY--VSKSAVVFGGFYL 272 vllleklltllkgrgdghshghdhghskehshlvp<-* ++++ek+l++l ++ + h+h+h+h+++ s +++ KIAA0062 273 FFFTEKILKILLKQ--KNEHHHGHSHYASESLPSK 305 PF02535.12.ls: domain 1 of 1, from 190 to 522: score 238.4, E = 1.5e-68 *->lllkiyaifallitsliglllplliprisklrpesrsskllsfllaF ++++ y+++ ++++sl++ll++ ++p ++k +++ll+++ a+ KIAA0062 190 VEVWGYGLLCVTVISLCSLLGASVVPFMKK----TFYKRLLLYFIAL 232 AaGvlLgtaFlHLLPealealesspclgslhgpwhefpfaglivllGffl A+G+l + a++ L+Pea++++ + + ++ +++ +v++Gf+l KIAA0062 233 AIGTLYSNALFQLIPEAFGFN--------PLEDYY--VSKSAVVFGGFYL 272 vllleklltllkgrgdghshghdhghskehshlvpdees.ake....... ++++ek+l++l ++ + h+h+h+h+++ s +++ + + ++ ++++ KIAA0062 273 FFFTEKILKILLKQ--KNEHHHGHSHYASESLPSKKDQEeGVMeklqngd 320 ..........gnhdeaesaahesdvennhvvhhghheghhhhhhegpekg ++ +++ + + d+ ++ ++e+ ++++v+ ++ ++ + g + KIAA0062 321 ldhmipqhcsSELDGKAPMVDEKVIVGSLSVQDLQASQSACYWLKGVRYS 370 esdkesglrvadieiilsqflaawllllglilHsffeGLAiGasfsssts ++ + aw+++l+++lH+f++GLAiGasf++s KIAA0062 371 ------DIGTL-----------AWMITLSDGLHNFIDGLAIGASFTVSVF 403 lgislfiAvlfHklpeglGlgaiLlqagfsrkkavlPWvlqllfalttpi +gis+++A+l+ ++p++lG+++iLl ag+s +a++ ++l+a+ +++ KIAA0062 404 QGISTSVAILCEEFPHELGDFVILLNAGMSIQQALF---FNFLSACCCYL 450 GiaiGigimrtsydsnspgadivsgiLlafaAGtflYvalvelLPeelan G a+Gi+ g+ ++ +++a+a+G+flY++l ++ Pe+ + KIAA0062 451 GLAFGILA----------GSHFSANWIFALAGGMFLYISLADMFPEMNEV 490 seedsgqsslkl.qllqllalllGfalMalia<-* +ed++ +s+ ++++q+l+ll+Gf +M+++ KIAA0062 491 CQEDERKGSILIpFIIQNLGLLTGFTIMVVLT 522 PF02535.12.fs: domain 2 of 2, from 365 to 522: score 163.2, E = 6.2e-46 *->sglrvadieiilsqflaawllllglilHsffeGLAiGasfssstslg +g+r++di + aw+++l+++lH+f++GLAiGasf++s +g KIAA0062 365 KGVRYSDIGTL------AWMITLSDGLHNFIDGLAIGASFTVSVFQG 405 islfiAvlfHklpeglGlgaiLlqagfsrkkavlPWvlqllfalttpiGi is+++A+l+ ++p++lG+++iLl ag+s +a++ ++l+a+ +++G KIAA0062 406 ISTSVAILCEEFPHELGDFVILLNAGMSIQQALF---FNFLSACCCYLGL 452 aiGigimrtsydsnspgadivsgiLlafaAGtflYvalvelLPeelanse a+Gi+ g+ ++ +++a+a+G+flY++l ++ Pe+ + + KIAA0062 453 AFGILA----------GSHFSANWIFALAGGMFLYISLADMFPEMNEVCQ 492 edsgqsslkl.qllqllalllGfalMalia<-* ed++ +s+ ++++q+l+ll+Gf +M+++ KIAA0062 493 EDERKGSILIpFIIQNLGLLTGFTIMVVLT 522 //