# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha01020.fasta.huge -Q ../query/KIAA0062.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0062, 531 aa
 vs ./tmplib.23147 library

1986974 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.4267+/-0.00469; mu= 16.1379+/- 0.320
 mean_var=76.3574+/-17.466, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.146774

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1265  ( 835 res)   hj04493                     ( 835)  563 129.1 1.3e-30


>>KIAA1265  ( 835 res)   hj04493                          (835 aa)
 initn: 818 init1: 334 opt: 563  Z-score: 641.7  bits: 129.1 E(): 1.3e-30
Smith-Waterman score: 736;  31.161% identity (61.711% similar) in 491 aa overlap (130-528:341-829)

     100       110       120       130       140       150         
KIAA00 QLKALLNHLDVGVGRGNVTQHVQGHRNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPT
                                     :..  .:.  .. . .: :... .  .::.
KIAA12 HTRKREAPHVKNNAIISLRKDLNEDDHHHECLNVTQLLKYYGHGANSPISTDLFTYLCPA
              320       330       340       350       360       370

     160       170              180       190       200       210  
KIAA00 ILQQLDSRACTS-------ENQENEENEQTEEGRPSAVEVWGYGLLCVTVISLCSLLGAS
       .: :.::: :         :. ....:   :.    .. .:  :.. .::::: ::::. 
KIAA12 LLYQIDSRLCIEHFDKLLVEDINKDKNLVPEDEANIGASAWICGIISITVISLLSLLGVI
              380       390       400       410       420       430

            220       230       240       250                      
KIAA00 VVPFMKKTFYKRLLLYFIALAIGTLYSNALFQLIPEAFGFNP------------------
       .::....  .: :: ...:::.::. ..::..:.:.. : .                   
KIAA12 LVPIINQGCFKFLLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHGHSHGHESN
              440       450       460       470       480       490

             260       270       280                    290        
KIAA00 --LEDY-YVSKSAVVFGGFYLFFFTEKILKIL-------------LKQKNEHHHGHSHYA
         ::.:  : :. :..::.::.:. :. ....             .::..:.     . .
KIAA12 KFLEEYDAVLKGLVALGGIYLLFIIEHCIRMFKHYKQQRGKQKWFMKQNTEESTIGRKLS
              500       510       520       530       540       550

      300       310       320       330                    340     
KIAA00 SESLPSKKDQEEGVMEKLQNGDLDHMIPQHCSSE-----LDGK--AP------MVDEKVI
       ...: .  :..   .. : . : : .. .   .:     :.:.  .:      . .::.:
KIAA12 DHKLNNTPDSDWLQLKPLAGTD-DSVVSEDRLNETELTDLEGQQESPPKNYLCIEEEKII
              560       570        580       590       600         

                350                                  360       370 
KIAA00 -------VGSLSVQDLQA---------------------------SQSACYWLKGVRYSD
              . ..  .::.:                           :.. :.  . .. . 
KIAA12 DHSHSDGLHTIHEHDLHAAAHNHHGENKTVLRKHNHQWHHKHSHHSHGPCHSGSDLKETG
     610       620       630       640       650       660         

             380       390       400       410       420       430 
KIAA00 IGTLAWMITLSDGLHNFIDGLAIGASFTVSVFQGISTSVAILCEEFPHELGDFVILLNAG
       :...:::. ..::.::: :::::::.:....  :::::.:..:.:.:::::::..::.::
KIAA12 IANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTGGISTSIAVFCHELPHELGDFAVLLKAG
     670       680       690       700       710       720         

             440       450       460          470       480        
KIAA00 MSIQQALFFNFLSACCCYLGLAFGILAGSHFSAN---WIFALAGGMFLYISLADMFPEMN
       :...::. .:.:::   :.:. .:  .: ... :   ::::...:::::..:.::.::: 
KIAA12 MTVKQAIVYNLLSAMMAYIGMLIGTAVG-QYANNITLWIFAVTAGMFLYVALVDMLPEML
     730       740       750        760       770       780        

      490       500        510       520       530    
KIAA00 EVCQEDERKGSILI-PFIIQNLGLLTGFTIMVVLTMYSGQIQIG   
       .   ..:..:   .  ::.:::::: ::.::.:...:  .:      
KIAA12 HGDGDNEEHGFCPVGQFILQNLGLLFGFAIMLVIALYEDKIVFDIQF
      790       800       810       820       830     




531 residues in 1 query   sequences
1986974 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:26 2008 done: Thu Dec 18 15:06:26 2008
 Total Scan time:  0.470 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]