Gene/Protein Characteristic Table for KIAA1910
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Product ID ORK00297
Accession No AB067497
Description SLIT and NTRK-like family, member 1, transcript variant 1
Clone name fh21867
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5187 bp)
Predicted protein sequence (760 aa)
Flexi ORF Clone FXC00297
Source Human fetal brain
Rouge ID mKIAA1910 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5187 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2211 bp
Genome contig ID gi51511729r_83249342
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
ACACTTTTTTAATAAAATCTTTATTATAAACCATG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACTATTCCTAAGGCCATTCATCATTTTCTCTCTTGATTCTTTTGTTTGTG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 13 r 83349342 83354529 1 99.0 Perfect prediction
Features of the protein sequence
Description

Length: 760 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96PX8 0 100.0 SLIT and NTRK-l...
Homo sapiens
AAH51738 0 99.9 SLIT and NTRK-l...
Homo sapiens
XP_001143864 0 99.9 slit and trk li...
Pan troglodytes
XP_001093240 0 99.7 similar to slit...
Macaca mulatta
BAG61443 0 99.7 unnamed protein...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB058757 3e-71 46.5 KIAA1854
AB020725 6.7e-38 41.2 KIAA0918
AB020655 8.5e-34 38.8 KIAA0848
AB011538 2.4e-12 23.7 KIAA0814
AB011537 5.1e-11 24.5 KIAA0813
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR001611 243 256 PR00019 Leucine-rich repeat
IPR001611 510 523 PR00019 Leucine-rich repeat
HMMPfam IPR001611 123 145 PF00560 Leucine-rich repeat
IPR001611 195 217 PF00560 Leucine-rich repeat
IPR001611 219 241 PF00560 Leucine-rich repeat
IPR001611 440 462 PF00560 Leucine-rich repeat
IPR001611 464 486 PF00560 Leucine-rich repeat
IPR001611 488 510 PF00560 Leucine-rich repeat
IPR001611 512 534 PF00560 Leucine-rich repeat
IPR001611 536 558 PF00560 Leucine-rich repeat
HMMSmart IPR003591 145 168 SM00369 Leucine-rich repeat
IPR003591 169 192 SM00369 Leucine-rich repeat
IPR003591 193 216 SM00369 Leucine-rich repeat
IPR003591 217 240 SM00369 Leucine-rich repeat
IPR003591 244 264 SM00369 Leucine-rich repeat
IPR000483 276 326 SM00082 Cysteine-rich flanking region
IPR003591 438 461 SM00369 Leucine-rich repeat
IPR003591 462 485 SM00369 Leucine-rich repeat
IPR003591 486 509 SM00369 Leucine-rich repeat
IPR003591 510 533 SM00369 Leucine-rich repeat
IPR003591 534 557 SM00369 Leucine-rich repeat
IPR003591 558 581 SM00369 Leucine-rich repeat
IPR000483 593 643 SM00082 Cysteine-rich flanking region

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 61 LALKMLLWILLLETSLCFAAGNV 83 PRIMARY 23
2 681 ISVLVPGLLLVFVTSAFTVVGML 703 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GAGCTTTTCCTACGAGATAAC
Primer_r TCCAGGTAATTGCTATCCATG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 13
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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