hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16174578/chunk_1/iprscan-20080502-16174578.nocrc
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Query sequence: KIAA1910
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                            116.6    6.6e-32  12
PF00560.23.fs Leucine Rich Repeat                             94.2    3.6e-25  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   1/12    123   145 ..     1    24 []     9.3      4.8
PF00560.23.ls   4/12    195   217 ..     1    24 []    11.0      2.3
PF00560.23.fs   5/12    219   241 ..     1    24 []    11.1    0.054
PF00560.23.ls   5/12    219   241 ..     1    24 []    13.0     0.98
PF00560.23.ls   7/12    440   462 ..     1    24 []     8.8        6
PF00560.23.fs   8/12    464   486 ..     1    24 []    12.3    0.026
PF00560.23.ls   8/12    464   486 ..     1    24 []    14.1     0.46
PF00560.23.ls   9/12    488   510 ..     1    24 []    10.9      2.5
PF00560.23.ls  10/12    512   534 ..     1    24 []    11.4      1.9
PF00560.23.fs  11/12    536   558 ..     1    24 []    11.3    0.048
PF00560.23.ls  11/12    536   558 ..     1    24 []    13.2     0.88

Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 12, from 123 to 145: score 9.3, E = 4.8
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +  +L L+g N slt+ +p+++ n+   
    KIAA1910   123    QFYHLFLHG-N-SLTRLFPNEFaNF    145  

PF00560.23.ls: domain 4 of 12, from 195 to 217: score 11.0, E = 2.3
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       Le+L  +  N  l ++++++++++l   
    KIAA1910   195    DLEYLQADF-N-LL-RDIDPGaFqDL    217  

PF00560.23.fs: domain 5 of 12, from 219 to 241: score 11.1, E = 0.054
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +Le+L L++ N  ++ +lp++ ++     
    KIAA1910   219    KLEVLILND-N-LIS-TLPANvFqYV    241  

PF00560.23.ls: domain 5 of 12, from 219 to 241: score 13.0, E = 0.98
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +Le+L L++ N  ++ +lp++ ++     
    KIAA1910   219    KLEVLILND-N-LIS-TLPANvFqYV    241  

PF00560.23.ls: domain 7 of 12, from 440 to 462: score 8.8, E = 6
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      n++eL L++ N ++  s+ +s++ +    
    KIAA1910   440    NVQELFLRD-N-KIH-SIRKShFvDY    462  

PF00560.23.fs: domain 8 of 12, from 464 to 486: score 12.3, E = 0.026
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL  LdL++ N ++  ++++++++nl   
    KIAA1910   464    NLILLDLGN-N-NIA-TVENNtFkNL    486  

PF00560.23.ls: domain 8 of 12, from 464 to 486: score 14.1, E = 0.46
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL  LdL++ N ++  ++++++++nl   
    KIAA1910   464    NLILLDLGN-N-NIA-TVENNtFkNL    486  

PF00560.23.ls: domain 9 of 12, from 488 to 510: score 10.9, E = 2.5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L++L++++ N  l ++l+ +++ +l   
    KIAA1910   488    DLRWLYMDS-N-YL-DTLSREkFaGL    510  

PF00560.23.ls: domain 10 of 12, from 512 to 534: score 11.4, E = 1.9
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nLe+L++++ N  ++  + +++++ +   
    KIAA1910   512    NLEYLNVEY-N-AIQ-LILPGtFnAM    534  

PF00560.23.fs: domain 11 of 12, from 536 to 558: score 11.3, E = 0.048
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++L L++ N  l +slp++ + +    
    KIAA1910   536    KLRILILNN-N-LL-RSLPVDvFaGV    558  

PF00560.23.ls: domain 11 of 12, from 536 to 558: score 13.2, E = 0.88
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++L L++ N  l +slp++ + +    
    KIAA1910   536    KLRILILNN-N-LL-RSLPVDvFaGV    558  

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