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SpecieshumanProduct IDFXC00297Cloning SiteSgfI-PmeISymbolSLITRK1
Alias : LRRC12, TTMDescriptionSLIT and NTRK-like family, member 1, transcript variant 1
Length: 2088 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 696 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS9464.1 5.8e-209 100.0 SLITRK1 CCDS14679.1 2.6e-79 43.0 SLITRK4 CCDS14680.1 8.4e-79 44.1 SLITRK2 CCDS9465.1 3e-38 41.5 SLITRK5 CCDS41903.1 6.3e-37 41.3 SLITRK6
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 179 194 PF00560 Leucine-rich repeat IPR001611 400 422 PF00560 Leucine-rich repeat HMMSmart IPR003591 81 104 SM00369 Leucine-rich repeat IPR003591 105 128 SM00369 Leucine-rich repeat IPR003591 129 152 SM00369 Leucine-rich repeat IPR003591 153 176 SM00369 Leucine-rich repeat IPR003591 180 200 SM00369 Leucine-rich repeat IPR000483 212 262 SM00082 Cysteine-rich flanking region IPR003591 374 397 SM00369 Leucine-rich repeat IPR003591 398 421 SM00369 Leucine-rich repeat IPR003591 422 445 SM00369 Leucine-rich repeat IPR003591 446 469 SM00369 Leucine-rich repeat IPR003591 470 493 SM00369 Leucine-rich repeat IPR003591 494 517 SM00369 Leucine-rich repeat IPR000483 529 579 SM00082 Cysteine-rich flanking region ProfileScan IPR001611 59 80 PS51450 Leucine-rich repeat IPR001611 83 104 PS51450 Leucine-rich repeat IPR001611 106 128 PS51450 Leucine-rich repeat IPR001611 131 152 PS51450 Leucine-rich repeat IPR001611 155 176 PS51450 Leucine-rich repeat IPR001611 178 199 PS51450 Leucine-rich repeat IPR001611 376 397 PS51450 Leucine-rich repeat IPR001611 400 421 PS51450 Leucine-rich repeat IPR001611 424 445 PS51450 Leucine-rich repeat IPR001611 448 469 PS51450 Leucine-rich repeat IPR001611 472 493 PS51450 Leucine-rich repeat IPR001611 495 516 PS51450 Leucine-rich repeat
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 1 MLLWILLLETSLCFAAGNVTGDV 23 PRIMARY 23 2 617 ISVLVPGLLLVFVTSAFTVVGML 639 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_443142 696 137580,609678,613229 100.0 100.0 NP_001268432 696 137580,609678,613229 100.0 100.0 XP_011529567 837 300562 43.0 95.5 NP_775101 837 300562 43.0 95.5 XP_005262422 837 300562 43.0 95.5 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KA1910 Download>KIAA1910 2088 bp ATGCTGCTTTGGATTCTGTTGCTGGAGACGTCTCTTTGTTTTGCCGCTGGAAACGTTACA GGGGACGTTTGCAAAGAGAAGATCTGTTCCTGCAATGAGATAGAAGGGGACCTACACGTA GACTGTGAAAAAAAGGGCTTCACAAGTCTGCAGCGTTTCACTGCCCCGACTTCCCAGTTT TACCATTTATTTCTGCATGGCAATTCCCTCACTCGACTTTTCCCTAATGAGTTCGCTAAC TTTTATAATGCGGTTAGTTTGCACATGGAAAACAATGGCTTGCATGAAATCGTTCCGGGG GCTTTTCTGGGGCTGCAGCTGGTGAAAAGGCTGCACATCAACAACAACAAGATCAAGTCT TTTCGAAAGCAGACTTTTCTGGGGCTGGACGATCTGGAATATCTCCAGGCTGATTTTAAT TTATTACGAGATATAGACCCGGGGGCCTTCCAGGACTTGAACAAGCTGGAGGTGCTCATT TTAAATGACAATCTCATCAGCACCCTACCTGCCAACGTGTTCCAGTATGTGCCCATCACC CACCTCGACCTCCGGGGTAACAGGCTGAAAACGCTGCCCTATGAGGAGGTCTTGGAGCAA ATCCCTGGTATTGCGGAGATCCTGCTAGAGGATAACCCTTGGGACTGCACCTGTGATCTG CTCTCCCTGAAAGAATGGCTGGAAAACATTCCCAAGAATGCCCTGATCGGCCGAGTGGTC TGCGAAGCCCCCACCAGACTGCAGGGTAAAGACCTCAATGAAACCACCGAACAGGACTTG TGTCCTTTGAAAAACCGAGTGGATTCTAGTCTCCCGGCGCCCCCTGCCCAAGAAGAGACC TTTGCTCCTGGACCCCTGCCAACTCCTTTCAAGACAAATGGGCAAGAGGATCATGCCACA CCAGGGTCTGCTCCAAACGGAGGTACAAAGATCCCAGGCAACTGGCAGATCAAAATCAGA CCCACAGCAGCGATAGCGACGGGTAGCTCCAGGAACAAACCCTTAGCTAACAGTTTACCC TGCCCTGGGGGCTGCAGCTGCGACCACATCCCAGGGTCGGGTTTAAAGATGAACTGCAAC AACAGGAACGTGAGCAGCTTGGCTGATTTGAAGCCCAAGCTCTCTAACGTGCAGGAGCTT TTCCTACGAGATAACAAGATCCACAGCATCCGAAAATCGCACTTTGTGGATTACAAGAAC CTCATTCTGTTGGATCTGGGCAACAATAACATCGCTACTGTAGAGAACAACACTTTCAAG AACCTTTTGGACCTCAGGTGGCTATACATGGATAGCAATTACCTGGACACGCTGTCCCGG GAGAAATTCGCGGGGCTGCAAAACCTAGAGTACCTGAACGTGGAGTACAACGCTATCCAG CTCATCCTCCCGGGCACTTTCAATGCCATGCCCAAACTGAGGATCCTCATTCTCAACAAC AACCTGCTGAGGTCCCTGCCTGTGGACGTGTTCGCTGGGGTCTCGCTCTCTAAACTCAGC CTGCACAACAATTACTTCATGTACCTCCCGGTGGCAGGGGTGCTGGACCAGTTAACCTCC ATCATCCAGATAGACCTCCACGGAAACCCCTGGGAGTGCTCCTGCACAATTGTGCCTTTC AAGCAGTGGGCAGAACGCTTGGGTTCCGAAGTGCTGATGAGCGACCTCAAGTGTGAGACG CCGGTGAACTTCTTTAGAAAGGATTTCATGCTCCTCTCCAATGACGAGATCTGCCCTCAG CTGTACGCTAGGATCTCGCCCACGTTAACTTCGCACAGTAAAAACAGCACTGGGTTGGCG GAGACCGGGACGCACTCCAACTCCTACCTAGACACCAGCAGGGTGTCCATCTCGGTGTTG GTCCCGGGACTGCTGCTGGTGTTTGTCACCTCCGCCTTCACCGTGGTGGGCATGCTCGTG TTTATCCTGAGGAACCGAAAGCGGTCCAAGAGACGAGATGCCAACTCCTCCGCGTCCGAG ATTAATTCCCTACAGACAGTCTGTGACTCTTCCTACTGGCACAATGGGCCTTACAACGCA GATGGGGCCCACAGAGTGTATGACTGTGGCTCTCACTCGCTCTCAGAC
Cloned ORF protein sequence for pF1KA1910 Download>KIAA1910 696 aa MLLWILLLETSLCFAAGNVTGDVCKEKICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQF YHLFLHGNSLTRLFPNEFANFYNAVSLHMENNGLHEIVPGAFLGLQLVKRLHINNNKIKS FRKQTFLGLDDLEYLQADFNLLRDIDPGAFQDLNKLEVLILNDNLISTLPANVFQYVPIT HLDLRGNRLKTLPYEEVLEQIPGIAEILLEDNPWDCTCDLLSLKEWLENIPKNALIGRVV CEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPAQEETFAPGPLPTPFKTNGQEDHAT PGSAPNGGTKIPGNWQIKIRPTAAIATGSSRNKPLANSLPCPGGCSCDHIPGSGLKMNCN NRNVSSLADLKPKLSNVQELFLRDNKIHSIRKSHFVDYKNLILLDLGNNNIATVENNTFK NLLDLRWLYMDSNYLDTLSREKFAGLQNLEYLNVEYNAIQLILPGTFNAMPKLRILILNN NLLRSLPVDVFAGVSLSKLSLHNNYFMYLPVAGVLDQLTSIIQIDLHGNPWECSCTIVPF KQWAERLGSEVLMSDLKCETPVNFFRKDFMLLSNDEICPQLYARISPTLTSHSKNSTGLA ETGTHSNSYLDTSRVSISVLVPGLLLVFVTSAFTVVGMLVFILRNRKRSKRRDANSSASE INSLQTVCDSSYWHNGPYNADGAHRVYDCGSHSLSD
Nucleotide Sequence (with vector) for pF1KA1910 Download>pF1KA1910 5201 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCTGCTTTGG ATTCTGTTGCTGGAGACGTCTCTTTGTTTTGCCGCTGGAAACGTTACAGGGGACGTTTGC AAAGAGAAGATCTGTTCCTGCAATGAGATAGAAGGGGACCTACACGTAGACTGTGAAAAA AAGGGCTTCACAAGTCTGCAGCGTTTCACTGCCCCGACTTCCCAGTTTTACCATTTATTT CTGCATGGCAATTCCCTCACTCGACTTTTCCCTAATGAGTTCGCTAACTTTTATAATGCG GTTAGTTTGCACATGGAAAACAATGGCTTGCATGAAATCGTTCCGGGGGCTTTTCTGGGG CTGCAGCTGGTGAAAAGGCTGCACATCAACAACAACAAGATCAAGTCTTTTCGAAAGCAG ACTTTTCTGGGGCTGGACGATCTGGAATATCTCCAGGCTGATTTTAATTTATTACGAGAT ATAGACCCGGGGGCCTTCCAGGACTTGAACAAGCTGGAGGTGCTCATTTTAAATGACAAT CTCATCAGCACCCTACCTGCCAACGTGTTCCAGTATGTGCCCATCACCCACCTCGACCTC CGGGGTAACAGGCTGAAAACGCTGCCCTATGAGGAGGTCTTGGAGCAAATCCCTGGTATT GCGGAGATCCTGCTAGAGGATAACCCTTGGGACTGCACCTGTGATCTGCTCTCCCTGAAA GAATGGCTGGAAAACATTCCCAAGAATGCCCTGATCGGCCGAGTGGTCTGCGAAGCCCCC ACCAGACTGCAGGGTAAAGACCTCAATGAAACCACCGAACAGGACTTGTGTCCTTTGAAA AACCGAGTGGATTCTAGTCTCCCGGCGCCCCCTGCCCAAGAAGAGACCTTTGCTCCTGGA CCCCTGCCAACTCCTTTCAAGACAAATGGGCAAGAGGATCATGCCACACCAGGGTCTGCT CCAAACGGAGGTACAAAGATCCCAGGCAACTGGCAGATCAAAATCAGACCCACAGCAGCG ATAGCGACGGGTAGCTCCAGGAACAAACCCTTAGCTAACAGTTTACCCTGCCCTGGGGGC TGCAGCTGCGACCACATCCCAGGGTCGGGTTTAAAGATGAACTGCAACAACAGGAACGTG AGCAGCTTGGCTGATTTGAAGCCCAAGCTCTCTAACGTGCAGGAGCTTTTCCTACGAGAT AACAAGATCCACAGCATCCGAAAATCGCACTTTGTGGATTACAAGAACCTCATTCTGTTG GATCTGGGCAACAATAACATCGCTACTGTAGAGAACAACACTTTCAAGAACCTTTTGGAC CTCAGGTGGCTATACATGGATAGCAATTACCTGGACACGCTGTCCCGGGAGAAATTCGCG GGGCTGCAAAACCTAGAGTACCTGAACGTGGAGTACAACGCTATCCAGCTCATCCTCCCG GGCACTTTCAATGCCATGCCCAAACTGAGGATCCTCATTCTCAACAACAACCTGCTGAGG TCCCTGCCTGTGGACGTGTTCGCTGGGGTCTCGCTCTCTAAACTCAGCCTGCACAACAAT TACTTCATGTACCTCCCGGTGGCAGGGGTGCTGGACCAGTTAACCTCCATCATCCAGATA GACCTCCACGGAAACCCCTGGGAGTGCTCCTGCACAATTGTGCCTTTCAAGCAGTGGGCA GAACGCTTGGGTTCCGAAGTGCTGATGAGCGACCTCAAGTGTGAGACGCCGGTGAACTTC TTTAGAAAGGATTTCATGCTCCTCTCCAATGACGAGATCTGCCCTCAGCTGTACGCTAGG ATCTCGCCCACGTTAACTTCGCACAGTAAAAACAGCACTGGGTTGGCGGAGACCGGGACG CACTCCAACTCCTACCTAGACACCAGCAGGGTGTCCATCTCGGTGTTGGTCCCGGGACTG CTGCTGGTGTTTGTCACCTCCGCCTTCACCGTGGTGGGCATGCTCGTGTTTATCCTGAGG AACCGAAAGCGGTCCAAGAGACGAGATGCCAACTCCTCCGCGTCCGAGATTAATTCCCTA CAGACAGTCTGTGACTCTTCCTACTGGCACAATGGGCCTTACAACGCAGATGGGGCCCAC AGAGTGTATGACTGTGGCTCTCACTCGCTCTCAGACGTTTAAACGAATTCGAGCTCGGTA CCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGC CCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGG GGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCT TGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTG CTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCG GGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTT GCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCT GGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGA TGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAA CAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGAC TGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGG CGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAG GCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTT GTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTG TCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTG CATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGA GCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAG GGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGAT CTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTT TCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTG GCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTT TACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTC TTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGC TCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACAT GTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTT CCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCG AAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTC TCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGT GGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAA GCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTA TCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAA CAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAA CTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTT CGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTT TTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGAT CTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCAT GAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCA CGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTA AGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTA TCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCC GTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACT TACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGG CGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT GATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAA CTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGG GAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA TCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGA ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGC ATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTT TGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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