Gene/Protein Characteristic Table for KIAA1304
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Product ID ORK06987
Accession No AB037725
Description SLIT-ROBO Rho GTPase activating protein 1
Clone name fh04032
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5633 bp)
Predicted protein sequence (1051 aa)
Source Human fetal brain
Features of the cloned cDNA sequence
Description

Length: 5633 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1097 bp
Genome contig ID gi89161190f_62562572
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CAGCCTGGGCAGCATAGTGTGAGACCCTGTCTCTT
Flanking genome sequence
(261257 - 261306)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAATGCTACAAAGTCCTGATGATCCTAAATTTGAAATCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 12 f 62662572 62823827 21 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 1051 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001164248 0 99.8 SLIT-ROBO Rho G...
Pan troglodytes
XP_001164049 0 99.0 SLIT-ROBO Rho G...
Pan troglodytes
XP_001116821 0 98.9 similar to SLIT...
Macaca mulatta
EAW97122 0 100.0 SLIT-ROBO Rho G...
Homo sapiens
Q91Z69 0 97.9 SLIT-ROBO Rho G...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB007871 4e-148 68.9 KIAA0411
AB007925 3.1e-129 68.0 KIAA0456
AB032982 7e-52 76.8 KIAA1156
D50921 1.1e-40 46.1 KIAA0131
AB040934 5.8e-09 33.0 KIAA1501
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001452 714 763 PD000066 Src homology-3
FPrintScan IPR001452 726 741 PR00452 Src homology-3
IPR001452 743 752 PR00452 Src homology-3
IPR001452 754 766 PR00452 Src homology-3
HMMPfam IPR001060 11 110 PF00611 Cdc15/Fes/CIP4
IPR000198 486 638 PF00620 RhoGAP
IPR001452 712 766 PF00018 Src homology-3
HMMSmart IPR001060 11 110 SM00055 Cdc15/Fes/CIP4
IPR000198 483 657 SM00324 RhoGAP
IPR001452 712 767 SM00326 Src homology-3
ProfileScan IPR001060 11 76 PS50133 Cdc15/Fes/CIP4
IPR000198 470 660 PS50238 RhoGAP
IPR001452 709 768 PS50002 Src homology-3
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ACTTGCAATTGTCTCCATGGG
Primer_r TTCAAGCAGTAACAGCAGAGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 12
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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