hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23060998/chunk_1/iprscan-20080501-23060998.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1304 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 215.6 2.7e-63 1 PF00620.17.ls RhoGAP domain 217.5 2.8e-62 1 PF00611.13.fs Fes/CIP4 homology domain 93.6 5.9e-27 1 PF00611.13.ls Fes/CIP4 homology domain 95.5 1.4e-25 1 PF00018.18.fs SH3 domain 50.0 6.6e-13 1 PF00018.18.ls SH3 domain 52.0 1.9e-12 1 PF07653.7.fs Variant SH3 domain 38.6 1.8e-10 1 PF07653.7.ls Variant SH3 domain 40.3 6e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00611.13.fs 1/1 11 110 .. 1 107 [] 93.6 5.9e-27 PF00611.13.ls 1/1 11 110 .. 1 107 [] 95.5 1.4e-25 PF00620.17.ls 1/1 486 638 .. 1 155 [] 217.5 2.8e-62 PF00620.17.fs 1/1 486 638 .. 1 155 [] 215.6 2.7e-63 PF00018.18.fs 1/1 712 766 .. 1 59 [] 50.0 6.6e-13 PF00018.18.ls 1/1 712 766 .. 1 59 [] 52.0 1.9e-12 PF07653.7.ls 1/1 713 766 .. 1 69 [] 40.3 6e-09 PF07653.7.fs 1/1 713 766 .. 1 69 [] 38.6 1.8e-10 Alignments of top-scoring domains: PF00611.13.fs: domain 1 of 1, from 11 to 110: score 93.6, E = 5.9e-27 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk +++++l +++ k+L+++++ +++ll+dl++F+r++a+iE eY+++ KIAA1304 11 LEIRAQL--VEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRN 55 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl++++ k+R s ++++ +k++ ls++ ++w ll+++ ++s KIAA1304 56 LEKLAERFMAKTR----STKDHQQYKKDQNLLSPV-NCWYLLLNQVRRES 100 klHsqlseqL<-* k+H +ls+++ KIAA1304 101 KDHATLSDIY 110 PF00611.13.ls: domain 1 of 1, from 11 to 110: score 95.5, E = 1.4e-25 *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk +++++l +++ k+L+++++ +++ll+dl++F+r++a+iE eY+++ KIAA1304 11 LEIRAQL--VEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRN 55 LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls L+kl++++ k+R s ++++ +k++ ls++ ++w ll+++ ++s KIAA1304 56 LEKLAERFMAKTR----STKDHQQYKKDQNLLSPV-NCWYLLLNQVRRES 100 klHsqlseqL<-* k+H +ls+++ KIAA1304 101 KDHATLSDIY 110 PF00620.17.ls: domain 1 of 1, from 486 to 638: score 217.5, E = 2.8e-62 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Plive+Ci+f+ +GL+ +GI+RvsGs+ +++ +++ f+rge + KIAA1304 486 PLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENPLAD 532 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +++d+++vA++LKl++R L +PL+++e ++++i ++++++ er + KIAA1304 533 DQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLIS-CIRIDNLYERALH 581 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +r+ll +LP+ ++ryL+a+Ln+ +q+s++N+M+++NLAi+FgPtL++ KIAA1304 582 IRKLLLTLPRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMP 631 ppdgdsad<-* p+ +++ KIAA1304 632 VPEI-QDQ 638 PF00620.17.fs: domain 1 of 1, from 486 to 638: score 215.6, E = 2.7e-63 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln Plive+Ci+f+ +GL+ +GI+RvsGs+ +++ +++ f+rge + KIAA1304 486 PLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENPLAD 532 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea d +++d+++vA++LKl++R L +PL+++e ++++i ++++++ er + KIAA1304 533 DQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLIS-CIRIDNLYERALH 581 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +r+ll +LP+ ++ryL+a+Ln+ +q+s++N+M+++NLAi+FgPtL++ KIAA1304 582 IRKLLLTLPRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMP 631 ppdgdsad<-* p+ +++ KIAA1304 632 VPEI-QDQ 638 PF00018.18.fs: domain 1 of 1, from 712 to 766: score 50.0, E = 6.6e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++DY++r++ ELsFkkG + + + + +WW+gr + G KIAA1304 712 IEAIAKFDYVGRSARELSFKKGASLLLYHRASE-DWWEGRHN---GI 754 eGliPsNYVepv<-* Gl+P++Y+ KIAA1304 755 DGLVPHQYIVVQ 766 PF00018.18.ls: domain 1 of 1, from 712 to 766: score 52.0, E = 1.9e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A++DY++r++ ELsFkkG + + + + +WW+gr + G KIAA1304 712 IEAIAKFDYVGRSARELSFKKGASLLLYHRASE-DWWEGRHN---GI 754 eGliPsNYVepv<-* Gl+P++Y+ KIAA1304 755 DGLVPHQYIVVQ 766 PF07653.7.ls: domain 1 of 1, from 713 to 766: score 40.3, E = 6e-09 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +dyv+ ++++e Ls+kkG + ++ + +++wwe KIAA1304 713 EAIAKFDYVG-RSARE------LSFKKGASLLLY----HRASEDWWE 748 geslggGrrrRGlvPssaveel<-* g+ +G GlvP++++ ++ KIAA1304 749 GRH--NGID--GLVPHQYIVVQ 766 PF07653.7.fs: domain 1 of 1, from 713 to 766: score 38.6, E = 1.8e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe ++a +dyv+ ++++e Ls+kkG + ++ + +++wwe KIAA1304 713 EAIAKFDYVG-RSARE------LSFKKGASLLLY----HRASEDWWE 748 geslggGrrrRGlvPssaveel<-* g+ +G GlvP++++ ++ KIAA1304 749 GRH--NGID--GLVPHQYIVVQ 766 //