Gene/Protein Characteristic Table for KIAA1156
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Product ID ORK06988
Accession No AB032982
Description SLIT-ROBO Rho GTPase activating protein 3
Clone name hh05667
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5677 bp)
Predicted protein sequence (348 aa)
Source Human adult brain
Features of the cloned cDNA sequence
Description

Length: 5677 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 4628 bp
Genome contig ID gi89161205r_8950581
PolyA signal sequence
(AAGAAA,-10)
+----*----+----*----+----*----+----
GGTGACAGGGCAAGACTCCGTCTCAAAGAAAAAGG
Flanking genome sequence
(99534 - 99485)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAGAAAGAAAAGAAAGTGTACTTGACTAAAGAGCAGGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 9050115 9097971 9 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 348 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW63950 7.2e-128 98.3 SLIT-ROBO Rho G...
Homo sapiens
XP_590495 7.8e-128 98.3 similar to SLIT...
Bos taurus
XP_001495819 7.8e-128 98.3 SLIT-ROBO Rho G...
Equus caballus
AAN57784 7.8e-128 98.3 WAVE-associated...
Homo sapiens
XP_869609 7.9e-128 98.3 similar to SLIT...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB007871 6e-112 98.3 KIAA0411
AB037725 1.1e-86 76.8 KIAA1304
AB007925 8.3e-68 68.4 KIAA0456
D50921 3.3e-50 47.5 KIAA0131
AB018312 0.00027 26.5 KIAA0769
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AGAGATGGAAGGCTTAGGCTG
Primer_r ATCTCTGACAAGGAAACGTAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name GeneBridge 4
Primer_f TCTCTTCCCACCTGCTACACC
Primer_r AATCTGAGCCTGGCCCAAAGC
PCR product length 102 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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