Gene/Protein Characteristic Table for KIAA1266
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Product ID ORK00789
Accession No AB033092
Description metastasis associated 1 family, member 3, transcript variant 1
Clone name hj06235
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5484 bp)
Predicted protein sequence (601 aa)
Flexi ORF Clone FXC00789
Source Human adult brain
Rouge ID mKIAA1266 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5484 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 3548 bp
Genome contig ID gi89161199f_42548689
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TTGTATTGTGTTTCCAATAAATTCCTGGAAATTTT
Flanking genome sequence
(288903 - 288952)
----+----*----+----*----+----*----+----*----+----*
GCCTGGTTTTATGCTGTTCTTTACTAGGATGATGGCTCAGGTGTAAGACT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 2 f 42648689 42837590 17 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 601 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001110956 0 100.0 metastasis asso...
Macaca mulatta
Q9BTC8 0 99.8 Metastasis-asso...
Homo sapiens
XP_001110843 0 100.0 metastasis asso...
Macaca mulatta
XP_515434 0 99.8 metastasis asso...
Pan troglodytes
XP_532947 0 96.6 similar to Meta...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB007927 9.3e-19 26.3 KIAA0458
D31888 1.4e-05 26.6 KIAA0071
AB037764 5e-05 24.4 KIAA1343
AB046830 0.00013 23.7 KIAA1610
AB033019 0.00042 27.0 KIAA1193
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001025 18 155 PF01426 Bromo adjacent region
IPR000949 156 217 PF01448 ELM2
IPR014778 276 322 PF00249 Myb
IPR000679 386 423 PF00320 Zinc finger
HMMSmart IPR001025 12 155 SM00439 Bromo adjacent region
IPR001005 275 324 SM00717 SANT
IPR000679 380 434 SM00401 Zinc finger
ProfileScan IPR001025 12 155 PS51038 Bromo adjacent region
IPR000949 156 267 PS51156 ELM2
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CCTGTTCCTCTGCACTATGTC
Primer_r CCTTACAGACAGACAATCCAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 2
Experimental conditions
Panel name GeneBridge 4
Primer_f CCTGTTCCTCTGCACTATGTC
Primer_r CCTTACAGACAGACAATCCAC
PCR product length 137 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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