hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22015530/chunk_1/iprscan-20080501-22015530.nocrc
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Query sequence: KIAA1266
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00439                                                  95.6    5.8e-24   1
SM00401                                                  57.4    1.9e-12   1
SM00717                                                  41.8      9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00439    1/1      12   155 ..     1   163 []    95.6  5.8e-24
SM00717    1/1     275   324 ..     1    53 []    41.8    9e-08
SM00401    1/1     380   434 ..     1    54 []    57.4  1.9e-12

Alignments of top-scoring domains:
SM00439: domain 1 of 1, from 12 to 155: score 95.6, E = 5.8e-24
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                         +  D+V++e+++             ++py + rIee+++t++g+
    KIAA1266    12    GFPRDRDYVYFENSS-------------SNPYLIRRIEELNKTASGN 45   

                   kskkvrvrwfyRPedtvlgkarllerepr...........l.kd......
                     ++++v +fyR +d++      + ++++ ++ +++++++++ d +++++
    KIAA1266    46 --VEAKVVCFYRRRDISNTL--IMLADKHakeieeesettVeADltdkqk 91   

                   yafdknEvflsecPceddvpledIigkCnVlklsdyeklrpeesnsdakl
                   ++  ++E+fls +  ++ +p+ +I+gkC+V+ l++ e++  +        
    KIAA1266    92 HQLKHRELFLSRQ--YESLPATHIRGKCSVALLNETESVLSYL------- 132  

                   erakaEERKkkgeedvFfcellYdptkgsFkklp<-*
                              + ed+Ff+ l+Ydp+ +++  ++   
    KIAA1266   133 -----------DKEDTFFYSLVYDPSLKTLLADK    155  

SM00717: domain 1 of 1, from 275 to 324: score 41.8, E = 9e-08
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelp.gRtpkqcrer
                      + +eW++ E  l++ea++kyG    +d++ I + + + ++  +++e+
    KIAA1266   275    EMEEWSASEASLFEEALEKYG----KDFNDIRQDFLpWKSLTSIIEY 317  

                   wrnllkp<-*
                   +++++ +   
    KIAA1266   318 YYMWKTT    324  

SM00401: domain 1 of 1, from 380 to 434: score 57.4, E = 1.9e-12
                   *->kgsgrrCsnCgtttTplWRrgpsGn.qktLCNACGLyykkhgvkkrp
                         gr+C++C+ t++ +W++++ +n q+ LC  C+Ly+kk+g++k+p
    KIAA1266   380    PLLGRACESCYATQSHQWYSWGPPNmQCRLCAICWLYWKKYGGLKMP 426  

                   lslkkdgi<-*
                   ++++ ++    
    KIAA1266   427 TQSEEEKL    434  

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