Gene/Protein Characteristic Table for KIAA0458
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Product ID ORK06630
Accession No AB007927
Description arginine-glutamic acid dipeptide (RE) repeats
Clone name ef01252
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
cDNA sequence DNA sequence (7341 bp)
Predicted protein sequence (1552 aa)
Source
Rouge ID mKIAA0458 by Kazusa Mouse cDNA Project
Note We replaced hg00715, former representative clones for KIAA0458 with ef01252. (2005/08/06)
Features of the cloned cDNA sequence
Description

Length: 7341 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 2680 bp
Genome contig ID gi89161185r_8235053
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TATTTGTGGACATAAATAAAACCAAGCTACACTAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACCCTTGGGTGTCTCCCGTGCACTGTCTCATTCCTGGAGAGTGGGCGGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 8335053 8638903 22 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 1552 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9P2R6 0 100.0 Arginine-glutam...
Homo sapiens
XP_001159355 0 99.7 atrophin-1 like...
Pan troglodytes
BAA95898 0 99.5 RERE [Homo sapi...
Homo sapiens
XP_001097280 0 99.4 similar to atro...
Macaca mulatta
XP_001159210 0 98.8 atrophin-1 like...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051468 2e-06 28.3 KIAA1681
AB051547 7.8e-05 24.9 KIAA1760
AB040955 0.00027 25.6 KIAA1522
AB040904 0.00046 25.7 KIAA1471
AB028999 0.0008 25.7 KIAA1076
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001025 89 269 PF01426 Bromo adjacent region
IPR000949 270 329 PF01448 ELM2
IPR014778 379 425 PF00249 Myb
IPR000679 493 528 PF00320 Zinc finger
IPR002951 554 1552 PF03154 Atrophin
HMMSmart IPR001025 89 269 SM00439 Bromo adjacent region
IPR001005 378 427 SM00717 SANT
IPR000679 487 538 SM00401 Zinc finger
ProfileScan IPR001025 89 269 PS51038 Bromo adjacent region
IPR000949 270 373 PS51156 ELM2
Experimental conditions
Primer_f
Primer_r
PCR conditions °C sec °C sec cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f ACGATTTCTGGGTGTCTACTG
Primer_r CGTATCTTGTTCGGTGTCCTC
PCR product length 163 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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