# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06235.fasta.huge -Q ../query/KIAA1266.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1266, 601 aa vs ./tmplib.24314 library 1986904 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.2637+/-0.00496; mu= 19.5592+/- 0.338 mean_var=85.0208+/-19.639, 0's: 0 Z-trim: 8 B-trim: 7 in 1/39 Lambda= 0.139095 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0458 ( 1552 res) ef01252 (1552) 400 90.7 9.3e-19 KIAA0071 ( 396 res) ha00472 ( 396) 176 45.0 1.4e-05 KIAA1343 ( 520 res) fj00420 ( 520) 168 43.5 5e-05 KIAA1610 ( 484 res) fj11544 ( 484) 161 42.1 0.00013 KIAA1193 ( 544 res) fg00739 ( 544) 153 40.5 0.00042 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 418 init1: 214 opt: 400 Z-score: 428.6 bits: 90.7 E(): 9.3e-19 Smith-Waterman score: 561; 26.253% identity (56.713% similar) in 499 aa overlap (53-538:173-641) 30 40 50 60 70 80 KIAA12 ENSSSNPYLIRRIEELNKTASGNVEAKVVCFYRRRDISNTLI--MLADKHAKEIEEESET .::. .. ... .. :.: .:... KIAA04 VASQPPQHLSEAGRGPVGSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRH-----NENDS 150 160 170 180 190 90 100 110 120 130 140 KIAA12 TVEADLTDKQKHQLKHRELFLSRQYESLPATHIRGKCSVALLNETESVLSYLDKEDTFFY : .:: .:.::::.: .. :. .::::... ... .. . . :.::: KIAA04 GRELVITDPV---IKNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFY 200 210 220 230 240 250 150 160 170 180 190 200 KIAA12 SLVYDPSLKTLLADKGEIRVGPRYQADIPEMLLEGESDEREQSKLEVKVWDPNSPLTDRQ : :.: . : . .::::::: .:: .:.. : .. : :: :. ..: . KIAA04 ILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPG--VNDCD 260 270 280 290 300 310 210 220 230 240 250 260 KIAA12 IDQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAI . ..: .::....:: : .:. . . .::::: : ..:..::.. .:: ..:. KIAA04 LLMYLRAARSMAAFAGMCDGGST------EDGCVAASRDDTTLNALNTLHESGYDAGKAL 320 330 340 350 360 270 280 290 300 310 320 KIAA12 SVLVPLGGPVLCRDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM . :: : : . . :. .:.. : ..:..:::.: ::...:: : .: .::. KIAA04 QRLVKKPVPKLIE---KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 370 380 390 400 410 420 330 340 350 360 370 KIAA12 WKTTD---------RYVQQKRLKAAEAESKLKQVYIPTYKPNPNQISTSNGKPGAVNGAV :: : :. .: .. .... : :. :. . .. :... .. KIAA04 WKKTPEAASSRAHRRHRRQAVFRRIKTRTASTPVNTPSRPPSSEFLDLSSASEDDFDSE- 430 440 450 460 470 480 380 390 400 410 420 430 KIAA12 GTTFQPQNPLLGRACESCYATQSHQWYSWGPPNMQCRLCAICWLYWKKYGGLKMPTQSEE . .. : : ::. :..: :..:. : :. ::. : ...:::: ..: : KIAA04 ----DSEQELKGYACRHCFTTTSKDWHHGGRENIL--LCTDCRIHFKKYG--ELPPI--E 490 500 510 520 530 440 450 460 470 480 490 KIAA12 EKLSPSPTTEDPRVRSHVSRQAMQGMPVRNTGSPKSAVKT-RQAFFLHTTYFTKFARQVC . ..: : : . . .. ..: .: . . :.... :. :. . KIAA04 KPVDPPPFMFKPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGRTSPINEDI 540 550 560 570 580 590 500 510 520 530 540 KIAA12 KNTLRLRQAARRPFVAINYAAIRAEYADRHAELSGSPLKS-KSTRKPLACIIGYLEIHPA ... : .: . : . : . : ..::::: : :. .: KIAA04 RSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSPLKSNKRQREKVASDTEEADRTSS 600 610 620 630 640 650 550 560 570 580 590 600 KIAA12 KKPNVIRSTPSLQTPTTKRMLTTPNHTSLSILGKRNYSHHNGLDELTCCVSD KIAA04 KKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSD 660 670 680 690 700 710 >>KIAA0071 ( 396 res) ha00472 (396 aa) initn: 254 init1: 81 opt: 176 Z-score: 192.0 bits: 45.0 E(): 1.4e-05 Smith-Waterman score: 238; 26.633% identity (59.296% similar) in 199 aa overlap (156-344:14-177) 130 140 150 160 170 180 KIAA12 ESVLSYLDKEDTFFYSLVYDPSLKTLLADKGEIRVGPRYQADIPEM---LLEGESDEREQ : .::::.::: .:.. : .:.::.. KIAA00 GSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDN 10 20 30 40 190 200 210 220 230 240 KIAA12 SKLEVKVWDPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITL : . ::.::. :.. ..:.....:. .. .. KIAA00 --LGMLVWSPNQNLSEAKLDEYIAIAKE--------------------------KHGYNM 50 60 70 250 260 270 280 290 300 KIAA12 FHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEMEEWSASEASLFEEALEKYGKDFNDIR .:. :. :.... .... : : : .::.. . :::.:. .:: :. :. KIAA00 EQALGMLFWHKHNIEKSLADL-PNFTPF-----PDEWTVEDKVLFEQAFSFHGKTFHRIQ 80 90 100 110 120 310 320 330 340 350 KIAA12 QDFLPWKSLTSIIEYYYMWKTT-------DRYVQQKRLKAAEAESKLKQVYIPTYKPNPN : .:: ::..:....:: :: : ::...... . :.:..:.. KIAA00 Q-MLPDKSIASLVKFYYSWKKTRTKTSVMDRHARKQKREREESEDELEEANGNNPIDIEV 130 140 150 160 170 180 360 370 380 390 400 410 KIAA12 QISTSNGKPGAVNGAVGTTFQPQNPLLGRACESCYATQSHQWYSWGPPNMQCRLCAICWL KIAA00 DQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTV 190 200 210 220 230 240 >>KIAA1343 ( 520 res) fj00420 (520 aa) initn: 205 init1: 87 opt: 168 Z-score: 182.1 bits: 43.5 E(): 5e-05 Smith-Waterman score: 222; 24.364% identity (52.000% similar) in 275 aa overlap (137-408:6-241) 110 120 130 140 150 160 KIAA12 SLPATHIRGKCSVALLNETESVLSYLDKEDTFFYSLVYDPSLKTLLADKGEIRVGPRYQA .:: : . . .:: : .::: .::: KIAA13 VSLPFSFFSFLFFIYIFWHCFADVG-MRVGAEYQA 10 20 30 170 180 190 200 210 220 KIAA12 DIPEMLLEGESDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARAVGTFARALDCSSSVRQ ::: . : . .... . ::.: . : ..:.....:. . .:.: KIAA13 RIPE-FDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGY--------NVEQ 40 50 60 70 80 230 240 250 260 270 280 KIAA12 PSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAISVLVPLGGPVLCRDEMEEWSASEASL :. :. :.... .... : : : .::.. . : KIAA13 ------------------ALGMLFWHKHNIEKSLADL-PNFTPF-----PDEWTVEDKVL 90 100 110 120 290 300 310 320 330 340 KIAA12 FEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRLKAAEAESKLKQ-- ::.:. .::.:. :.: .:: :...:...::: :: : .. .: . .. .: KIAA13 FEQAFSFHGKSFHRIQQ-MLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGD 130 140 150 160 170 180 350 360 370 380 390 400 KIAA12 VYIPTYKPNPNQISTSNGKPGAVNGAVGTTFQP-QNPLLGRACESCYATQSHQWYSWGPP . . .: . . :. : :.: :: :. .: . . : . .:. .: KIAA13 SDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLG-RREYQSLQHRHHSQ--- 190 200 210 220 230 410 420 430 440 450 460 KIAA12 NMQCRLCAICWLYWKKYGGLKMPTQSEEEKLSPSPTTEDPRVRSHVSRQAMQGMPVRNTG .:: KIAA13 RSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKME 240 250 260 270 280 290 >>KIAA1610 ( 484 res) fj11544 (484 aa) initn: 192 init1: 127 opt: 161 Z-score: 174.8 bits: 42.1 E(): 0.00013 Smith-Waterman score: 213; 23.741% identity (50.719% similar) in 278 aa overlap (68-333:57-317) 40 50 60 70 80 90 KIAA12 LNKTASGNVEAKVVCFYRRRDISNTLIMLADKHAKEIEEESETTVEADLTDKQKHQLKHR :.. .: :::.: .:: :.. . ... KIAA16 IEDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENK 30 40 50 60 70 80 100 110 120 130 140 150 KIAA12 ELFL---SRQYESLPATHIRGKCSVALLNETESV----LSYLDKEDTFFYSLVYDPSLKT : . : : . ... . ::: . : . .:.: .. : . KIAA16 EENIKDSSGQEDETQSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDEDYIP 90 100 110 120 130 140 160 170 180 190 200 210 KIAA12 LLADKGEIRVGPRYQADIPEMLLEGESDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARA : :: :: .::.:: . . . .:. . . .:::. :. : . ..: KIAA16 SEDWKKEIMVGSMFQAEIPVGICRYKENEKVYENDDQLLWDPEYLPEDKVIIFLKDASRR 150 160 170 180 190 200 220 230 240 250 260 KIAA12 VGTF--ARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAISVLVPLGG .: ..:. .: ... . . : . ..: : .....: KIAA16 TGDEKGVEAIPEGSHIKDNEQALYELVKCN----FDTEEALRRLRFNVKAA--------- 210 220 230 240 250 270 280 290 300 310 320 KIAA12 PVLCRDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY- :.:. :. : ::..:. :::::. :. . . .:. . .::::: ..:: KIAA16 ----REELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSERYD 260 270 280 290 300 330 340 350 360 370 380 KIAA12 --VQQKRLKAAEAESKLKQVYIPTYKPNPNQISTSNGKPGAVNGAVGTTFQPQNPLLGRA .:: :. KIAA16 FFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDGTV 310 320 330 340 350 360 >>KIAA1193 ( 544 res) fg00739 (544 aa) initn: 191 init1: 142 opt: 153 Z-score: 165.6 bits: 40.5 E(): 0.00042 Smith-Waterman score: 236; 26.979% identity (54.252% similar) in 341 aa overlap (58-377:110-413) 30 40 50 60 70 80 KIAA12 NPYLIRRIEELNKTASGNVEAKVVCFYRRRDISNTLI-MLADKH--AKEI---EEESETT :.. .: : ::. ::.. ::: :: KIAA11 QSNDMPFDELLALYGYEASDPISDRESEGGDVAPNLPDMTLDKEQIAKDLLSGEEEEETQ 80 90 100 110 120 130 90 100 110 120 130 140 KIAA12 VEADLTDKQKHQLKHRELFLSRQYESLPATHIRGKCSVALLNETESVLSYLDKEDTFFYS :: . . . .:: .:. . : . : : : ..:: ::.. KIAA11 SSADDLTPSVTSHEASDLFPNRSGSRFLADEDREPGSSAS-SDTE--------EDSL--- 140 150 160 170 180 150 160 170 180 190 200 KIAA12 LVYDPSLKTLLADKGEIRVGPRYQADIPEMLLEGESDEREQSKLEVKVWDPNSPLTDRQI :. : : :: :::..:::. .. :. . .. ... .. .::: : : .:.. KIAA11 ----PANKC----KKEIMVGPQFQADLSNLHLNRHCEKIYENEDQL-LWDP-SVLPEREV 190 200 210 220 230 210 220 230 240 250 260 KIAA12 DQFLVVARAVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLYRHSYDLSSAIS ..:: ::: : . .. :.: . :. . . .:.. : . .... :. KIAA11 EEFLY--RAVKR--RWHEMAG----PQLPEGEAVKDSEQALYE----LVKCNFNVEEALR 240 250 260 270 280 270 280 290 300 310 320 KIAA12 VLVPLGGPVLCRDEMEEWSASEASLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW : .. :. :: . :: : ::.... .::.:. :. . . .:. .::::.: KIAA11 RLR-FNVKVI-RDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLW 290 300 310 320 330 340 330 340 350 360 KIAA12 KTTDRY---VQQKRLK--------AAEAESKLKQVYIPTY--KPNPNQISTSNGK--PGA : ..:: .:: :: ...:.. : : .: :.: . .. . : . KIAA11 KKSERYDYFAQQTRLGRRKYVPSGTTDADQDLDGSD-PDGPGRPRPEQDTLTGMRTDPLS 350 360 370 380 390 400 370 380 390 400 410 420 KIAA12 VNGAVGTTFQPQNPLLGRACESCYATQSHQWYSWGPPNMQCRLCAICWLYWKKYGGLKMP :.:..: .: KIAA11 VDGTAGGLDEPGVASDGLPSSEPGPCSFQQLDESPAVPLSHRPPALADPASYQPAVTAPE 410 420 430 440 450 460 601 residues in 1 query sequences 1986904 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:26 2008 done: Thu Dec 18 15:15:26 2008 Total Scan time: 0.500 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]