hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22015530/chunk_1/iprscan-20080501-22015530.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1266 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01448.14.fs ELM2 domain 98.8 4.3e-28 1 PF01448.14.ls ELM2 domain 100.6 4.4e-27 1 PF01426.8.fs BAH domain 66.7 1e-17 2 PF01426.8.ls BAH domain 61.6 2.3e-15 1 PF00249.21.fs Myb-like DNA-binding domain 43.2 7.8e-11 1 PF00249.21.ls Myb-like DNA-binding domain 44.9 2.5e-10 1 PF00320.17.fs GATA zinc finger 31.0 2.5e-08 1 PF00320.17.ls GATA zinc finger 33.0 9.3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01426.8.ls 1/1 18 155 .. 1 159 [] 61.6 2.3e-15 PF01426.8.fs 2/2 91 155 .. 75 159 .] 50.5 2.6e-13 PF01448.14.ls 1/1 156 217 .. 1 82 [] 100.6 4.4e-27 PF01448.14.fs 1/1 156 217 .. 1 82 [] 98.8 4.3e-28 PF00249.21.ls 1/1 276 322 .. 1 65 [] 44.9 2.5e-10 PF00249.21.fs 1/1 276 322 .. 1 65 [] 43.2 7.8e-11 PF00320.17.fs 1/1 386 423 .. 1 36 [] 31.0 2.5e-08 PF00320.17.ls 1/1 386 423 .. 1 36 [] 33.0 9.3e-07 Alignments of top-scoring domains: PF01426.8.ls: domain 1 of 1, from 18 to 155: score 61.6, E = 2.3e-15 *->etysvGDfVlvepddpknleetfKagrnvalepyyvarIeeivelfe D+V++e+ + ++py + rIee+ + KIAA1266 18 ------DYVYFENSS---------------SNPYLIRRIEEL---NK 40 dsdgskekmvh.vrwf...........................yRPeetP +++g+ ++++ v+++++++ +++ +++ ++ ++++++++ + t KIAA1266 41 TASGN--VEAKvVCFYrrrdisntlimladkhakeieeesettVEADLT- 87 yikslgrafnkDirEvflsdecddvplediigkCeVlkksdpeslspeei + +++ k rE+fls++++ +p+ +i+gkC+V +++ es + KIAA1266 88 ---DKQKHQLK-HRELFLSRQYESLPATHIRGKCSVALLNETESVLSYL- 132 nsnAdkldrarAERKkkgeedvFfCellYdpekgsFkklp<-* + ed+Ff+ l+Ydp+ +++ ++ KIAA1266 133 -----------------DKEDTFFYSLVYDPSLKTLLADK 155 PF01426.8.fs: domain 2 of 2, from 91 to 155: score 50.5, E = 2.6e-13 *->grafnkDirEvflsdecddvplediigkCeVlkksdpeslspeeins ++ ++ rE+fls++++ +p+ +i+gkC+V +++ es + KIAA1266 91 KHQLKH--RELFLSRQYESLPATHIRGKCSVALLNETESVLSYL--- 132 nAdkldrarAERKkkgeedvFfCellYdpekgsFkklp<-* + ed+Ff+ l+Ydp+ +++ ++ KIAA1266 133 ---------------DKEDTFFYSLVYDPSLKTLLADK 155 PF01448.14.ls: domain 1 of 1, from 156 to 217: score 100.6, E = 4.4e-27 *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel geIrVG++yQAd+Pe+ l e+e+de+e++++ +++ KIAA1266 156 GEIRVGPRYQADIPEM----LLEGESDEREQSKL----------EVK 188 vWsPeDsqnqlddekideylrlarskksirtfera<-* vW+P+ ++l+d++id++l++ar ++tf+ra KIAA1266 189 VWDPN---SPLTDRQIDQFLVVARA---VGTFARA 217 PF01448.14.fs: domain 1 of 1, from 156 to 217: score 98.8, E = 4.3e-28 *->geIrVGskyQAdvPefidrqleeterdesedredLTkkedeekldel geIrVG++yQAd+Pe+ l e+e+de+e++++ +++ KIAA1266 156 GEIRVGPRYQADIPEM----LLEGESDEREQSKL----------EVK 188 vWsPeDsqnqlddekideylrlarskksirtfera<-* vW+P+ ++l+d++id++l++ar ++tf+ra KIAA1266 189 VWDPN---SPLTDRQIDQFLVVARA---VGTFARA 217 PF00249.21.ls: domain 1 of 1, from 276 to 322: score 44.9, E = 2.5e-10 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +++W+a E +l++ea+ek+Gk+ ++ I + + KIAA1266 276 MEEWSASEASLFEEALEKYGKD-----------FNDIRQDF------ 305 nvlgrtaeqcklryykyk<-* ++ ++ +++++yy++k KIAA1266 306 -LPWKSLTSIIEYYYMWK 322 PF00249.21.fs: domain 1 of 1, from 276 to 322: score 43.2, E = 7.8e-11 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +++W+a E +l++ea+ek+Gk+ ++ I + + KIAA1266 276 MEEWSASEASLFEEALEKYGKD-----------FNDIRQDF------ 305 nvlgrtaeqcklryykyk<-* ++ ++ +++++yy++k KIAA1266 306 -LPWKSLTSIIEYYYMWK 322 PF00320.17.fs: domain 1 of 1, from 386 to 423: score 31.0, E = 2.5e-08 *->CsnCgttkTplWRrgp..dGnrtLCNACGLyykkhgvk<-* C++C +t++ +W +++++++++ LC C+Ly+kk+g + KIAA1266 386 CESCYATQSHQWYSWGppNMQCRLCAICWLYWKKYGGL 423 PF00320.17.ls: domain 1 of 1, from 386 to 423: score 33.0, E = 9.3e-07 *->CsnCgttkTplWRrgp..dGnrtLCNACGLyykkhgvk<-* C++C +t++ +W +++++++++ LC C+Ly+kk+g + KIAA1266 386 CESCYATQSHQWYSWGppNMQCRLCAICWLYWKKYGGL 423 //