Gene/Protein Characteristic Table for KIAA1047
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00170
Accession No AB028970
Description nuclear receptor corepressor 1, transcript variant 3
Clone name hh01221s1
Vector information
The cDNA fragment was originally inserted at SalI-NotI site ...
cDNA sequence DNA sequence (7949 bp)
Predicted protein sequence (2348 aa)
Flexi ORF Clone FXC00170
Source Human adult brain
Rouge ID mKIAA1047 by Kazusa Mouse cDNA Project
Note We replaced hh01221, former representative clones for KIAA1047 with hh01221s1. (2003/4/2)
Features of the cloned cDNA sequence
Description

Length: 7949 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 891 bp
Genome contig ID gi51511734r_15775444
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
TTTTGTTTTGAAATAAATTTGACTACCCTGTCCAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGCTACAGTAGATTATTTGTGGTTTAAGGCTCCTGGTGTCTCAGGTTCCA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 r 15875444 16038652 45 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 2348 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAX04494 0 100.0 nuclear recepto...
Homo sapiens
XP_863820 0 94.7 similar to nucl...
Canis lupus fam...
CAI24058 0 91.7 nuclear recepto...
Mus musculus
XP_536653 0 87.7 similar to nucl...
Canis lupus fam...
XP_851485 0 90.1 similar to nucl...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D31888 0.00027 25.8 KIAA0071
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR014778 448 493 PF00249 Myb
IPR014778 636 681 PF00249 Myb
HMMSmart IPR001005 447 495 SM00717 SANT
IPR001005 635 683 SM00717 SANT
ProfileScan IPR001005 631 681 PS50090 SANT
Experimental conditions
Primer_f GTGCGTAACAGTGAGGTATGC
Primer_r TTGTAAATTTCCAGTGCAGGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name GeneBridge 4
Primer_f TTGTAAATTTCCAGTGCAGGC
Primer_r GTGCGTAACAGTGAGGTATGC
PCR product length 135 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp