# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh01221s1.fasta.huge -Q ../query/KIAA1047.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1047, 2348 aa
 vs ./tmplib.24314 library

1985157 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 13.2556+/-0.0106; mu= -20.0720+/- 0.714
 mean_var=473.9941+/-111.776, 0's: 0 Z-trim: 4  B-trim: 5 in 1/39
 Lambda= 0.058910

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 43, opt: 31, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0071  ( 396 res)   ha00472                     ( 396)  318 42.7 0.00027


>>KIAA0071  ( 396 res)   ha00472                          (396 aa)
 initn: 271 init1: 184 opt: 318  Z-score: 168.9  bits: 42.7 E(): 0.00027
Smith-Waterman score: 318;  25.773% identity (57.388% similar) in 291 aa overlap (447-724:102-383)

        420       430       440       450       460       470      
KIAA10 MMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASY
                                     : . :: ..: .:.. :  : :.:  : ..
KIAA00 GYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHRIQQM
              80        90       100       110       120       130 

        480       490       500       510       520       530      
KIAA10 LERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIARPSQEEKVEEKEEDKAEKT
       :  ::. . : .::  ::...  ... :.     .:.:.  :  .:...:: . ..    
KIAA00 LPDKSIASLVKFYYSWKKTRTKTSVMDRH-----ARKQKREREESEDELEEANGNNPIDI
             140       150       160            170       180      

          540              550       560       570       580       
KIAA10 E--KKEEEKKD-------EEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTAN
       :  ...: ::.        . : ::.... ... : :       ..:  .:.  .  .:.
KIAA00 EVDQNKESKKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAAT
        190       200       210       220       230       240      

       590       600       610       620       630       640       
KIAA10 SQGRRKGRITRSMTNEAAAASAAAAAATEEPPPPLPPPPEPISTEPVETSRWTEEEMEVA
       .  :.      :.  .    . . .:  :.    . :   :   .  . .::: ::. .:
KIAA00 TVLRQLDMELVSVKRQIQNIKQTNSALKEKLDGGIEPYRLPEVIQKCN-ARWTTEEQLLA
        250       260       270       280       290        300     

       650       660       670       680       690           700   
KIAA10 KKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQ----HKQKTSRKPRE
        ... ..::.. ::. ..:.:: .: :::. ::.:: :.:..::.    : .. .  : .
KIAA00 VQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKEETNGPSN
         310       320       330       340       350       360     

           710       720       730       740       750       760   
KIAA10 ERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEGAENSSDTESAPSPSPVEAVKPSED
       .. :   .:  ....  :.::                                       
KIAA00 QKPV---KSPDNSIKMPEEEDEAPVLDVRYASAS                          
            370       380       390                                




2348 residues in 1 query   sequences
1985157 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:07:03 2008 done: Thu Dec 18 15:07:04 2008
 Total Scan time:  1.130 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]