Gene/Protein Characteristic Table for KIAA0096
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00407
Accession No D43636
Description SNF related kinase, transcript variant 1
Clone name ha01240s1
Vector information
The cDNA fragment was originally inserted at the EcoRV-NotI ...
cDNA sequence DNA sequence (4882 bp)
Predicted protein sequence (766 aa)
Flexi ORF Clone FXC00407
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0096 by Kazusa Mouse cDNA Project
Note We replaced ha01240, former representative clones for KIAA0096 with ha01240s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 4882 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 2580 bp
Genome contig ID gi89161205f_43219696
PolyA signal sequence
(AATAAA,-29)
+----*----+----*----+----*----+----
CCAAATAATAAAGTGACATATTGGTGTTCAGCAAT
Flanking genome sequence
(147940 - 147989)
----+----*----+----*----+----*----+----*----+----*
ATAAACCGTGTCCTGTGTTGTATTGCTTCTCATGAGTGTAGCTTTGTGTG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 f 43319696 43367634 5 99.2 Perfect prediction
Features of the protein sequence
Description

Length: 766 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9NRH2 0 100.0 SNF-related ser...
Homo sapiens
AAH71567 0 99.6 SNRK protein [H...
Homo sapiens
XP_516395 0 99.6 SNF related kin...
Pan troglodytes
AAF86944 0 99.7 HSNFRK [Homo sa...
Homo sapiens
BAF84049 0 99.7 unnamed protein...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB018324 5.4e-30 34.4 KIAA0781
AB023216 2.7e-29 38.0 KIAA0999
AB058763 7e-29 32.6 KIAA1860
D79997 5.1e-23 36.5 KIAA0175
AB011109 1.5e-19 28.6 KIAA0537
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR000719 17 269 PD000001 Protein kinase
HMMPfam IPR000719 17 270 PF00069 Protein kinase
IPR000449 295 335 PF00627 Ubiquitin-associated/Translation elongation factor EF1B
HMMSmart IPR001245 17 270 SM00219 Tyrosine protein kinase
IPR002290 17 270 SM00220 Serine/threonine protein kinase
ProfileScan IPR000719 17 270 PS50011 Protein kinase
IPR000449 292 335 PS50030 Ubiquitin-associated/Translation elongation factor EF1B
ScanRegExp IPR000719 23 46 PS00107 Protein kinase
IPR008271 136 148 PS00108 Serine/threonine protein kinase
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name Genebridge 4
Primer_f CTAATTACACGGATGCTACAG
Primer_r AATGATGCTGTTGTGCTCCTC
PCR product length 165 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp