Gene/Protein Characteristic Table for KIAA1860
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Product ID ORK00935
Accession No AB058763
Description MAP/microtubule affinity-regulating kinase 4, transcript variant 2
Clone name fh18358
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4917 bp)
Predicted protein sequence (689 aa)
Flexi ORF Clone FXC00935
Source Human fetal brain
Rouge ID mKIAA1860 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4917 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 2845 bp
Genome contig ID gi42406306f_50346682
PolyA signal sequence
(AGTAAA,-18)
+----*----+----*----+----*----+----
TCAACTGGGGACAGTACAGTAAAGAACATCACAGC
Flanking genome sequence
(153701 - 153750)
----+----*----+----*----+----*----+----*----+----*
ATCTCACAGGTTCTGCATACCTTAATGTTTAGAATCTCTCCTAACCTTCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 19 f 50446682 50500381 18 99.9 Perfect prediction
Features of the protein sequence
Description

Length: 689 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW57334 0 100.0 MAP/microtubule...
Homo sapiens
BAB39380 0 99.9 MAP/microtubule...
Homo sapiens
Q96L34 1.6e-201 99.2 MAP/microtubule...
Homo sapiens
BAC03375 5.7e-201 99.1 microtubule aff...
Homo sapiens
XP_001057742 5.1e-198 97.2 similar to MAP/...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040910 3.9e-41 54.9 KIAA1477
AB023216 6.8e-32 52.2 KIAA0999
AB018324 9.7e-30 55.8 KIAA0781
AB011109 1.3e-22 33.1 KIAA0537
D43636 5e-22 32.5 KIAA0096
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR000719 60 310 PD000001 Protein kinase
HMMPfam IPR000719 60 311 PF00069 Protein kinase
IPR000449 331 370 PF00627 Ubiquitin-associated/Translation elongation factor EF1B
HMMSmart IPR001245 60 310 SM00219 Tyrosine protein kinase
IPR002290 60 311 SM00220 Serine/threonine protein kinase
IPR000449 332 369 SM00165 Ubiquitin-associated/Translation elongation factor EF1B
ProfileScan IPR000719 60 311 PS50011 Protein kinase
IPR000449 325 369 PS50030 Ubiquitin-associated/Translation elongation factor EF1B
ScanRegExp IPR000719 66 89 PS00107 Protein kinase
IPR008271 178 190 PS00108 Serine/threonine protein kinase
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GCGCAGATAGATTTAAGAGAG
Primer_r AGTTGAAGATCCCAGCTCCAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 19
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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