ROUGE

Gene/Protein Characteristic Table for mKIAA4183

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220529
Description :	ring finger protein 130. g1-related zinc finger protein.
Clone Name :	mfj08061 [Vector Info]
Source :	Mouse fetal brain

Features of the cloned DNA sequence	Description

Length: 4345 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3531 bp

Genome contig ID gi65527427f_49678267
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CAGGAACCCCTGGACCTAGCTGGTACCTGAAGTAG
Flanking genome sequence
(163929 - 163978)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAGAGTCATTCGTGGTTATTACTAAAAGGAAAG

Genomic structure deduced by Blast search against draft genome sequences

Features of the protein sequence	Description

Coding region: 2..811
Length: 270 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD93037	2.2e-107	97.4	ring finger pro...	Homo sapiens
XP_001143540	2.8e-107	97.4	ring finger pro...	Pan troglodytes
CAI24371	1.7e-105	100.0	ring finger pro...	Mus musculus
Q8VEM1	1.9e-105	100.0	Goliath homolog...	Mus musculus
Q6Y290	1.9e-105	100.0	Goliath homolog...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220374	1.4e-40	48.1	mKIAA1214

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003137 84 182 PF02225 Protease-associated PA

ProfileScan NULL 4 29 PS50310 NULL

IPR003137 118 189 PS50840 Protease-associated PA

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003137	84	182	PF02225	Protease-associated PA
ProfileScan	NULL	4	29	PS50310	NULL
IPR003137	118	189	PS50840	Protease-associated PA

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 19 40 RAGPARLAALALLTCSLWPTRA

176 198 KDILSYLEKNISVQMTIAVGTRM

208 230 LVFVSISFIVLMIISSAWLIFYF

Method	From	To	amino acid sequence
SOSUI	19	40	RAGPARLAALALLTCSLWPTRA
176	198	KDILSYLEKNISVQMTIAVGTRM
208	230	LVFVSISFIVLMIISSAWLIFYF

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3531 bp
Genome contig ID	gi65527427f_49678267
PolyA signal sequence (None)	+--------+--------+----*----+---- CAGGAACCCCTGGACCTAGCTGGTACCTGAAGTAG
Flanking genome sequence (163929 - 163978)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAGAGTCATTCGTGGTTATTACTAAAAGGAAAG

Gene/Protein Characteristic Table for mKIAA4183

Features of the cloned DNA sequence

Features of the protein sequence