FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4183.ptfa, 270 aa
 vs ./tmplib.26680 library

1768747 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7903+/-0.00385; mu= 10.6438+/- 0.258
 mean_var=66.9014+/-15.724, 0's: 0 Z-trim: 2  B-trim: 87 in 1/35
 Lambda= 0.1568

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1214  ( 397 res)   mbg16803                   ( 397)  670  160 1.4e-40


>>mKIAA1214  ( 397 res)   mbg16803                        (397 aa)
 initn: 676 init1: 382 opt: 670  Z-score: 821.1  bits: 160.2 E(): 1.4e-40
Smith-Waterman score: 670;  48.101% identity (51.818% ungapped) in 237 aa overlap (45-269:148-379)

           20        30        40        50                 60     
mKIAA4 SGAARAGPARLAALALLTCSLWPTRADNASQEYYTALINVTVQEP---------GRGTPL
                                     .:.:::..:.:  ::         : :. :
mKIAA1 QACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYLEPEPGAAVAGSGGGAEL
       120       130       140       150       160       170       

           70        80        90       100       110       120    
mKIAA4 -TFRIDRGRYGLDSPKAEVRGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQWIALLQRG
        : . . ::::  ::: ..::.:.      .. :.:.:::.:.: .: . :.::::. .:
mKIAA1 HTEKSECGRYGEHSPKQDARGEVVMA---SSAQDRLACDPNTKFVAPAHGKHWIALIPKG
       180       190       200          210       220       230    

          130       140        150       160       170       180   
mKIAA4 NCTFKEKISRAAFHNAVAVVIYN-NKSKEEPVTMTHPGTGDIIAVMITELRGKDILSYLE
       :::...::  : ..:: ::::.: ... .: .:: : :. ::.:.:: : .::.:.: ::
mKIAA1 NCTYRDKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSLLE
          240       250       260       270       280       290    

           190       200       210       220       230       240   
mKIAA4 KNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTNARDRN
       .::.: : :..:::   :  :: :.:::::::::::::: :::.::.::..::.::::::
mKIAA1 RNITVTMYITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRN
          300       310       320       330       340       350    

           250        260       270                 
mKIAA4 QRRLGDAAKKA-ISKLTTRTVKKGDKVQ                 
       :  .... .:: . ::..  . .: .:                  
mKIAA1 Q--VSSSLRKAWLCKLSANHTCQGINVVAHKSRDSKCLLTPPHTC
            360       370       380       390       




270 residues in 1 query   sequences
1768747 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:04:21 2006 done: Mon Mar 27 11:04:22 2006
 Scan time:  0.490 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]