ROUGE

Gene/Protein Characteristic Table for mKIAA1560

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK173202
Description :	Glycerol-3-phosphate acyltransferase, mitochondrial precursor.
Clone Name :	mfj43284 [Vector Info]
Source :	Mouse fetal brain

Features of the cloned DNA sequence	Description

Length: 4809 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2146 bp

Genome contig ID gi65553144r_54549025
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AGTCAAGTTTAATAAATAAAAACCTAATACTAAGC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGCCAG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1560 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1560	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 117..2663
Length: 848 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH19201	100.0	Glycerol-3-phos...	Mus musculus
Q61586	99.8	Glycerol-3-phos...	Mus musculus
P97564	96.6	Glycerol-3-phos...	Rattus norvegicus
EDL94451	96.5	glycerol-3-phos...	Rattus norvegicus
XP_001088103	92.8	mitochondrial g...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK131154	3.6e-60	33.5	mFLJ00202
AK004771	1.8e-25	27.4	mKIAA4214

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002123 226 376 PF01553 Phospholipid/glycerol acyltransferase

ProfileScan IPR002123 241 384 PS50239 Phospholipid/glycerol acyltransferase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002123	226	376	PF01553	Phospholipid/glycerol acyltransferase
ProfileScan	IPR002123	241	384	PS50239	Phospholipid/glycerol acyltransferase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 491 513 EHILFTASKSCAIMSTHIVACLL

595 616 NGVLHVFIMEAIIACSIYAVLN

Method	From	To	amino acid sequence
SOSUI	491	513	EHILFTASKSCAIMSTHIVACLL
595	616	NGVLHVFIMEAIIACSIYAVLN

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2146 bp
Genome contig ID	gi65553144r_54549025
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- AGTCAAGTTTAATAAATAAAAACCTAATACTAAGC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGCCAG

Gene/Protein Characteristic Table for mKIAA1560

Features of the cloned DNA sequence

Features of the protein sequence