ROUGE

Gene/Protein Characteristic Table for mKIAA1479

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122515
Description :	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D isoform 1. semaphorin 6D.
Clone Name :	mbg01940 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 6161 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2460 bp

Genome contig ID gi66880554f_123503823
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
CGCATGTAAAGTCAAAATAAAATATCCAAGTCATT
Flanking genome sequence
(677802 - 677851)
----+----*----+----*----+----*----+----*----+----*
ACATCCTGCCTTTTGATGTTAACAGGTTTGCACTGCGTCATGCTTTTATG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1479 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1479	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 672..3701
Length: 1009 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAH60680	100.0	Sema6d protein ...	Mus musculus
XP_001502498	95.7	sema domain, tr...	Equus caballus
XP_001112417	95.9	similar to sema...	Macaca mulatta
AAM69450	95.4	semaphorin 6D i...	Homo sapiens
XP_001164888	95.4	semaphorin 6D i...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK129459	1.3e-53	40.8	mKIAA1869
D85028	4.4e-28	34.8	mKIAA4055
BC049780	7e-25	35.4	mKIAA4225
AK129116	4.4e-23	35.5	mKIAA0331
AK173247	1.2e-17	33.7	mKIAA1739

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001627 70 507 PF01403 Semaphorin/CD100 antigen

IPR002165 525 580 PF01437 Plexin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001627	70	507	PF01403	Semaphorin/CD100 antigen
IPR002165	525	580	PF01437	Plexin

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 7 28 SSWPTMGFLLLWFCVLFLLVSR

599 621 VLITCVFAAFVLGAFIAGVAVYC

Method	From	To	amino acid sequence
SOSUI	7	28	SSWPTMGFLLLWFCVLFLLVSR
599	621	VLITCVFAAFVLGAFIAGVAVYC

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2460 bp
Genome contig ID	gi66880554f_123503823
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- CGCATGTAAAGTCAAAATAAAATATCCAAGTCATT
Flanking genome sequence (677802 - 677851)	----+--------+--------+--------+--------+----* ACATCCTGCCTTTTGATGTTAACAGGTTTGCACTGCGTCATGCTTTTATG

Gene/Protein Characteristic Table for mKIAA1479

Features of the cloned DNA sequence

Features of the protein sequence