ROUGE

Gene/Protein Characteristic Table for mKIAA1176

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122460
Description :	Solute carrier family 12 member 5.
Clone Name :	mbg06148 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5735 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2238 bp

Genome contig ID gi66880554f_164325072
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
ACACAATGCAATAAAAATAATTTTATTACACCCTT
Flanking genome sequence
(131391 - 131440)
----+----*----+----*----+----*----+----*----+----*
GATAGCCTGAAGGGTACGGTTTAGATGCTTCAGGAGGAAGTCAACTTCAC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA1176 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA1176	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 3..3497
Length: 1164 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAI54377	96.9	SLC12A5 protein...	Bos taurus
XP_587269	96.9	solute carrier ...	Bos taurus
AAK56092	100.0	K-Cl cotranspor...	Mus musculus
BAE27805	99.9	unnamed protein...	Mus musculus
AAH54808	99.9	Solute carrier ...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK131129	0	72.4	mFLJ00098

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004841 151 725 PF00324 Amino acid permease-associated region

HMMTigr IPR004842 70 1164 TIGR00930 Na-K-Cl cotransporter superfamily

ProfileScan IPR002293 142 626 PS50285 Amino acid/polyamine transporter I

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004841	151	725	PF00324	Amino acid permease-associated region
HMMTigr	IPR004842	70	1164	TIGR00930	Na-K-Cl cotransporter superfamily
ProfileScan	IPR002293	142	626	PS50285	Amino acid/polyamine transporter I

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 146 168 MGTFMGVYLPCLQNIFGVILFLR

180 202 ESFCMVFICCSCTMLTAISMSAI

223 245 PEFGGAVGLCFYLGTTFAGAMYI

250 272 EILLAYLFPAMAIFKAEDASGEA

281 303 VYGTCVLTCMATVVFVGVKYVNK

307 329 VFLGCVILSILAIYAGVIKSAFD

446 468 TSYFTLLVGIYFPSVTGIMAGSN

485 507 ILAIATTSAVYISSVVLFGACIE

522 544 NLVVGTLAWPSPWVIVIGSFFST

585 607 WALLLTACICEIGILIASLDEVA

610 632 LSMFFLMCYMFVNLACAVQTLLR

652 674 MSLCLALMFICSWYYALVAMLIA

Method	From	To	amino acid sequence
SOSUI	146	168	MGTFMGVYLPCLQNIFGVILFLR
180	202	ESFCMVFICCSCTMLTAISMSAI
223	245	PEFGGAVGLCFYLGTTFAGAMYI
250	272	EILLAYLFPAMAIFKAEDASGEA
281	303	VYGTCVLTCMATVVFVGVKYVNK
307	329	VFLGCVILSILAIYAGVIKSAFD
446	468	TSYFTLLVGIYFPSVTGIMAGSN
485	507	ILAIATTSAVYISSVVLFGACIE
522	544	NLVVGTLAWPSPWVIVIGSFFST
585	607	WALLLTACICEIGILIASLDEVA
610	632	LSMFFLMCYMFVNLACAVQTLLR
652	674	MSLCLALMFICSWYYALVAMLIA

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2238 bp
Genome contig ID	gi66880554f_164325072
PolyA signal sequence (AATAAA,-26)	+--------+--------+----*----+---- ACACAATGCAATAAAAATAATTTTATTACACCCTT
Flanking genome sequence (131391 - 131440)	----+--------+--------+--------+--------+----* GATAGCCTGAAGGGTACGGTTTAGATGCTTCAGGAGGAAGTCAACTTCAC

Gene/Protein Characteristic Table for mKIAA1176

Features of the cloned DNA sequence

Features of the protein sequence