hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mbg/mbg06148/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1176 ( 1164 res) mbg06148 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- 2a30 2a30: K-Cl cotransporter 2263.9 0 1 2A0306 2A0306: amino acid transporter -269.6 0.41 1 2A0302 2A0302: arginine/ornithine antiporter -354.3 0.86 1 2A0310 2A0310: amino acid permease (yeast) -396.4 0.34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- 2A0306 1/1 217 678 .. 1 451 [] -269.6 0.41 2A0310 1/1 218 692 .. 1 502 [] -396.4 0.34 2A0302 1/1 279 716 .. 1 507 [] -354.3 0.86 2a30 1/1 70 1164 .] 1 1171 [] 2263.9 0 Alignments of top-scoring domains: 2A0306: domain 1 of 1, from 217 to 678: score -269.6, E = 0.41 *->LrReLG..lFDltlLgiGaiiGtGiFvvtGiaAgkaGGPAviLsFvl +R+LG+++ ++ g+ +Gt F+ + ++ g+ + L+++ mKIAA1176 217 ISRSLGpeFGGAV--GLCFYLGT-TFAGAMYILGTIE---ILLAYLF 257 AGLtAlfiAL.vYaElaam...lPvaGsvYtYayeA...lG.....elvA + +A+f A ++ E+aam +++ v G + ++ G + + ++ mKIAA1176 258 PA-MAIFKAEdASGEAAAMlnnMRVYGTCVLTCMATvvfVGvkyvnKFAL 306 FiiGWvlileygVAvAavAvgw......sgYl.qefLeGfvGldLPavLt G v+ + + +++ ++++++ ++ l++ L+ G d a L mKIAA1176 307 VFLGCVILSILAIYAGVIKSAFdppnfpICLLgNRTLSR-HGFDVCAKLA 355 akPgdggGtFtvfNlPAllivlfltyilylGakeSgkvNsIlvvLKvlav g+ + l lf l+ + + + + ++ + ++ mKIAA1176 356 WE-GNET-------VTTRLWGLFCSSRLLNATCDEYFTRNNVTEIQGIP- 396 LlFaalGaihfksnPllvSNy........tpFmP.mGfGg.......... aa G i+ + S+y +++ + mP+ G++ +++ + +++ mKIAA1176 397 --GAASGLIKENLW----SSYltkgviveRRGMPsVGLADgtpvdmdhpy 440 Vlaat........alvFfAFiGFeavstaAEEvKnPerdiPkaIilSLiv V++ +++ + ++ F + +G a s +++++ iP + il mKIAA1176 441 VFSDMtsyftllvGIYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIAT 490 vTllYv....lvaavilGavRADVPfrqlagseaplslvkvsdlgqkiga + ++Y+++ l a i G+v D +g + +l+ s mKIAA1176 491 TSAVYIssvvLFGACIEGVVLRDKFGEAVNGNLVVGTLAWPS-------P 533 liitaGAVisiasvmlatlYgtsRvlFAmSRDGlLPksLSkvHpktkT.. + i +G +s+ ++ l l g R+l A+SRDG +P + v k+++ mKIAA1176 534 WVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVP--FLQVFGHGKAng 581 .PhvsilifsllaallAslvPlealaeltsigtLiaFalvnVavii..LR +P + l ++ + + l+++a s+ +L+ + vn a ++++L mKIAA1176 582 ePTWALLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAVqtL- 630 rrrPdlqRAFkcPlvpVLpaLaAALLAVlllCiyLllnlgegttviflvw +r P + F+ L L+ ++lC+ L+ + + + lv mKIAA1176 631 LRTPNWRPRFRY-YHWTLSFLG------MSLCLALMFICS---WYYALVA 670 mllGsvfYfiY<-* ml+ +iY mKIAA1176 671 MLIAG---LIY 678 2A0310: domain 1 of 1, from 218 to 692: score -396.4, E = 0.34 *->KksLKqRHiqMIAlGGtIGTGLlVGtGtaLatgGPaGlLIGYaivGs +sL + GG+ +GL +Gt++a + mKIAA1176 218 SRSLGP------EFGGA--VGLCFYLGTTFAGA-------------M 243 iiycviqslGEmatfyPvvsDaGsFatyasRFvdpslGFAvgynYllqWl i+ +i+ l +a ++P + F +++ G A + + mKIAA1176 244 YILGTIEIL--LAYLFP-AM--AIFK------AEDASGEAAAML------ 276 ivlPlElvaasmtIqYWttdkVnpavwIaIFyvviviiNlfGVkgyGEaE + n v+ + ++ + ++GVk+ mKIAA1176 277 -----------------N----NMRVYGTCVLTCMATVVFVGVKY----- 300 FwfssiKilaivGFiILsIi.licGGGpnhtgyIGfrYWhdPGAFaggti ++ + l+ +G +ILsI + +G + + AF ++ mKIAA1176 301 --VNKF-ALVFLGCVILSILaIYAGVI-KS-------------AFDPPNF 333 .................................................. + ++++ ++++ + + +++++ +++ + +++ + + ++ mKIAA1176 334 picllgnrtlsrhgfdvcaklawegnetvttrlwglfcssrllnatcdey 383 .................................................. ++++ ++ ++ ++ ++ +++ ++ +++ ++++ ++ + ++++ mKIAA1176 384 ftrnnvteiqgipgaasglikenlwssyltkgviverrgmpsvgladgtp 433 .............gidGskGrFkGvvsvfVtAAFsFgGtElvaLtagEaa + +++ ++ ++ + +++++ ++ + ++++ ag + mKIAA1176 434 vdmdhpyvfsdmtS-----------YFTLLVGIYFPS---VTGIMAG--S 467 NPR........KsiPkAaKrtvwRIlvfYiltlfliGflVPYNDPrLlss N R+++ ++ +KsiP + + +Yi +++l G+++ l mKIAA1176 468 N-RsgdlrdaqKSIPTGTILAIATTSAVYISSVVLFGACI---EGVVLRD 513 ssssdsk........AaaSPFVIAI.qnhGikvklPhiiNAVILisVlSv + ++++ ++ ++ A SP+VI I++ + +++ + mKIAA1176 514 KFGEAVNgnlvvgtlAWPSPWVIVIgSFFSTCG----------------A 547 aNSslYasSRtLyaLAhqGlAP..KilayvDRrGrPlvaiivsslFGlLA + sl +R+L+a +++G P +++ +G P a+++++ + ++ mKIAA1176 548 GLQSLTGAPRLLQAISRDGIVPflQVFGHGKANGEPTWALLLTACICEIG 597 FlavSkkeaeVFnWLlaiSglSglftWmsIclSHIRFRkAmkaQKDiiGR l +S e + i +++ l + m+ +l A+++Q + R mKIAA1176 598 ILIASLDE------VAPILSMFFLMCYMFVNL-------ACAVQ--TLLR 632 SldELpYKsqtgpy...GsyYalffn.iLiliaqfyvafaPvgWeggkfs + + + +y+ ++s ++ ++ +L++i+ y a++ mKIAA1176 633 TPN---WRPRFRYYhwtLSFLGMSLClALMFICSWYYALVA--------- 670 aksFFeaYlslPifivlYiGhKvYkrsdWtrliiklddiDLD<-* + + +i Yi ++ + W D mKIAA1176 671 --------MLIAGLIYKYIEYRGAEK-EWG-----------D 692 2A0302: domain 1 of 1, from 279 to 716: score -354.3, E = 0.86 *->MseekdsSkKlGlfALtALVvgSMiGsGIFsLPqnlAsvAgpGAvlI M G+ Lt + + +G + A v G v++ mKIAA1176 279 MRVY-------GTCVLTCMATVVFVG---VKYVNKFALVF-LGCVIL 314 GWiITG.vGmlaLAf...vFanLatkkPeLdGGiyaYAreGFGpyiGFsS + i+++ +G + Af+++ F +++ L + +r GF mKIAA1176 315 S-ILAIyAGVIKSAFdppNFPICL-----LGN--RTLSRHGFD------- 349 gWGYWls...awIGNVaYavllfSaL..gyFfPtPELRlFgsgnpvps.I ++ + aw GN + + l + ++ ++ +F+ +n +++ mKIAA1176 350 -----VCaklAWEGNETVTTRLWGLFcsSRLLNATCDEYFTRNNVTEIqG 394 l..gaSvL....lWvvtflvlrGvrqAAfINtitTiaKli.....PlflF ++++aS L +++lW+ + T ++++++++ P +++ mKIAA1176 395 IpgAASGLikenLWSSYL----------------TKGVIVerrgmPSVGL 428 iIigwf.wFkldlF..tadfWghdvpsLGSdvfsQVkntMlvTLWvFiGI + + +++ ++ +F++ ++ + +G f V ++M+ mKIAA1176 429 ADGTPVdMDHPYVFsdMTSYFTL---LVGI-YFPSVTGIMA--------- 465 EGAvvsSgrAknPksDVGkATvlGllgaLvIYiliTlL....slGvltqq + Sg + +++ + T+l+ ++ ++Yi++ +L + + Gv+ ++ mKIAA1176 466 --GSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLfgacIEGVVLRD 513 eLAnlpnPSmAavlehivGkWGav...LIslGLiiSvLGslLSWtllvAE + + n +vG+ + +++ I G +S +G+ L + l + mKIAA1176 514 KFGEAVNG------NLVVGTLAWPspwVIVIGSFFSTCGAGL--QSLTGA 555 ipflAA..kdGlFP..kiFgrvNkkgaPsvaLllTnilvQlflllilltn + +l A ++dG P +Fg ++g P+ aLllT+ + + +l+ l mKIAA1176 556 PRLLQAisRDGIVPflQVFGHGKANGEPTWALLLTACICEIGILIASLD- 604 sagslssaYntllsLAtvmiLvPYllSaayLlklskvgnGitHPHAGety + + + L +Y+++ ++ ++ ++ t+ mKIAA1176 605 ----------EVAPILSMFFLMCYMFVNLACAVQTLLR----------TP 634 pkkGPEiepiknrkalivGviAvvYsvwLlYAAGlkyLLlgfIlyapGii p+ + + ++++ +++L + y +++++++ + mKIAA1176 635 NW-----RPRFRYYHWTLSFLGMSLCLALMFICSWYY---ALVAMLIAGL 676 fYgrarkergkdkhvfnkkEi..liatiivilAviAiilLvsGsIsI<-* Y + + rg + kE++++i ++ + +A A +L G mKIAA1176 677 IYKYIEY-RGAE------KEWgdGIRGLSLSAARYALLRLEEGPPHT 716 2a30: domain 1 of 1, from 70 to 1164: score 2263.9, E = 0 *->ntvdavPriehyrntegqeerklnrpsleelhdllGFdkvvsllgpl n+++++P+i+++++++g+e++++n++++ee++d++ ++v+sll++l mKIAA1176 70 NPKESSPFINSTDTEKGREYDGRNMALFEEEMDTS--PMVSSLLSGL 114 adytnngqeskeheeaEeaeetkekppaeavkfGwvkGVlvpCLlNIwGV a+ytn++q+s eheeaE++e++k+kp +a+++G+++GV++pCL+NI+GV mKIAA1176 115 ANYTNLPQGSREHEEAENNEGGKKKP-VQAPRMGTFMGVYLPCLQNIFGV 163 iLFLRLsWIVGqAGIglslviillstvvTtiTglSmSAIATNGvVkGGGa iLFLRL+W+VG AGI++s++++++++++T++T++SmSAIATNGvV++GG+ mKIAA1176 164 ILFLRLTWVVGIAGIMESFCMVFICCSCTMLTAISMSAIATNGVVPAGGS 213 YYLISRSLGPEfGgSIGLiFafANAVAvAMYvvGfaEtvldYivPaaaLl YY+ISRSLGPEfGg++GL+F++++++A+AMY++G++E++l+Y++Pa+a++ mKIAA1176 214 YYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEILLAYLFPAMAIF 263 revnGtdnglkimvdpiNDiRIiGtvtvvvLlgIsfaGmewenKaqvlfL ++ +++++++++++N++R++Gt++++++++++f+G++++nK++++fL mKIAA1176 264 KA----EDASGEAAAMLNNMRVYGTCVLTCMATVVFVGVKYVNKFALVFL 309 vivllSilnivvGtiipasdekpakGffglkaeiFsenqfDvCaKt.evd ++v+lSil+i++G+i++a+d +p+++++ l+++++s+++fDvCaK+ +++ mKIAA1176 310 GCVILSILAIYAGVIKSAFD-PPNFPICLLGNRTLSRHGFDVCAKLaWEG 358 NeTVttrLWglFCsSrllnatCDeyfsannvTfvpgirgaeggvikENLW NeTVttrLWglFCsSrllnatCDeyf++nnvT+++gi+ga++g+ikENLW mKIAA1176 359 NETVTTRLWGLFCSSRLLNATCDEYFTRNNVTEIQGIPGAASGLIKENLW 408 SaYLeKGeivEkrglpStdvlgd.lve...lYvvaDintsFFslfgIFFP S+YL+KG+ivE+rg+pS++++++++v+ +++Yv++D++++F++l+gI+FP mKIAA1176 409 SSYLTKGVIVERRGMPSVGLADGtPVDmdhPYVFSDMTSYFTLLVGIYFP 458 svTGIlAGANiSGDLkDpqkAIPkGTLLAIltTtvvYlssvvlfGACvvR svTGI+AG+N+SGDL+D+qk+IP+GT+LAI tT++vY+ssvvlfGAC+++ mKIAA1176 459 SVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACIEG 508 dAsGdlnDtlvtggltnctslACklgfdfseCakntCeYGLmnnlqvmsl ++++d+++++v+ +nl+v++l mKIAA1176 509 VVLRDKFGEAVN------------------------------GNLVVGTL 528 vspfpplIvaGiFsATLssALaSLvsAPrllQALckDnIyPlLqfFgkGy ++p+p++Iv+G+F++T++++L+SL++APrllQA+++D I+P+Lq+Fg+G+ mKIAA1176 529 AWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDGIVPFLQVFGHGK 578 GkngEPlrayLLTffIallfiLIAeLntIAPIiSnFFLasYaliNfScFh ++ gEP++a+LLT++I++++iLIA+L+ +API+S+FFL++Y+++N++c++ mKIAA1176 579 AN-GEPTWALLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACAV 627 asLlrsPgWRPrFrYYnwwlSLlGaiLCvaiMFlisWwaALvaivIallL ++Llr+P+WRPrFrYY+w+lS+lG++LC+a+MF++sW++ALva++Ia+l+ mKIAA1176 628 QTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIAGLI 677 YkYVeYKkpdvnWGsstqalsYslALssllrLeevedHvKNwRPQcLVLt YkY+eY++++++WG+++++ls+s+A+++llrLee+++H+KNwRPQ+LVL+ mKIAA1176 678 YKYIEYRGAEKEWGDGIRGLSLSAARYALLRLEEGPPHTKNWRPQLLVLV 727 gppGkLednvvcrPaLldlasqlkkkgkGLmIvGsVlqGprkervkEasa +++ +d++v++P+Ll+l+sqlk +gkGL+IvGsVl+G++++++++a++ mKIAA1176 728 RVD---QDQNVVHPQLLSLTSQLK-AGKGLTIVGSVLEGTFLDNHPQAQR 773 aeekiqtwLekrKvkaFyavVvAedlreGvrhLiQasGLGrmkPNtlVmG aee+i++++e++Kvk+F++vV++++lr+Gv+hLiQ+ GLG++++Nt+++G mKIAA1176 774 AEESIRRLMEAEKVKGFCQVVISSNLRDGVSHLIQSGGLGGLQHNTVLVG 823 ykkdWrqaedpraletYigilhdafdahlaVvvvrvsegldisavlqaqe ++++Wrq+ed+++++++i++++++++ hla++v++++++++ + mKIAA1176 824 WPRNWRQKEDHQTWRNFIELVRETTAGHLALLVTKNVSMFPGN------- 866 elsssqekrvrlkdvivdadssedsiqpkfkksseltitkkekekdkkes mKIAA1176 - -------------------------------------------------- - kqldmhkeikyptaslneldqkllqassqfqkkQgkGtIDVWWLvdDGGL + +++++G+IDVWW+v+DGG+ mKIAA1176 867 -----------------------------P-ERFSEGSIDVWWIVHDGGM 886 tLLLPYLLttkkkWkkCKiRiFvgaqkddrseqekkdlatLLykfRidfe ++LLP+LL+++k+W+kCK+RiF++aq+dd+s+q+kkdl+t+Ly++Ri++e mKIAA1176 887 LMLLPFLLRHHKVWRKCKMRIFTVAQMDDNSIQMKKDLTTFLYHLRITAE 936 vivVlmkssDInaktypqkesveaFeemierfrleknekdreaqlvsdp. v+vV+m++sDI+a+ty++++++e++++++++++l+kne++re+q+++d++ mKIAA1176 937 VEVVEMHESDISAYTYEKTLVMEQRSQILKQMHLTKNEREREIQSITDEs 986 ..........nsaLRL.................................e +++ +++++ n +LRL+ ++++ +++++++++ + ++++ ++ +++++ mKIAA1176 987 rgsirrknpaNPRLRLnvpeetacdneekpeeevqlihdqsapscpsssP 1036 SlgsdeedEsetdeKvklkrekPwkitdeekgd.skssegfkdllsmkPd S+g+++e+E etd v+l+++k++++++++kg++++sseg+kd++smkP+ mKIAA1176 1037 SPGEEPEGERETDPEVHLTWTKDKSVAEKNKGPsPVSSEGIKDFFSMKPE 1086 ....lqsnrrksyrqvRLNEvlleySrdAaLvvlsLPvprkgsipdelYM ++ +qsn+r+++++vRLNEv++++SrdA+Lv+l++P+p++++++de+YM mKIAA1176 1087 wenlNQSNVRRMHTAVRLNEVIVNKSRDAKLVLLNMPGPPRNRNGDENYM 1136 awLEvLsedLPpvLLVRGnhrnVlTfYS<-* ++LEvL+e+L++v+LVRG++r+V+T+YS mKIAA1176 1137 EFLEVLTEQLDRVMLVRGGGREVITIYS 1164 //