hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06148/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1176  ( 1164 res)   mbg06148

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
AA_permease Amino acid permease                          94.6      2e-24   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
AA_permease   1/1     151   725 ..     1   528 []    94.6    2e-24

Alignments of top-scoring domains:
AA_permease: domain 1 of 1, from 151 to 725: score 94.6, E = 2e-24
                   *->hvqmialGgviGtGLfvgsgsvlaqaGpaglsllgyllagvviflvm
                      +v + +l +++G+ Lf+++ +v++ aG+    ++++ +++ ++ l++
   mKIAA1176   151    GVYLPCLQNIFGVILFLRLTWVVGIAGIMES-FCMVFICCSCTMLTA 196  

                   lslgEmstngpvvsGsfyayasrflgpslGfatGwnylltvYwlswvavl
                   +s+++++tng v +G+ y+++sr+lgp++G+a+G+      Y+ + +a++
   mKIAA1176   197 ISMSAIATNGVVPAGGSYYMISRSLGPEFGGAVGLC----FYLGTTFAGA 242  

                   aleltaagiliqfwetfpdipylwvtgslvdSgpndiRvIgavflvllli
                   ++ l++  il+ ++++  +i+++   +  +   +n  Rv g+  l+ + +
   mKIAA1176   243 MYILGTIEILLAYLFPAMAIFKAEDASGEAAAMLNNMRVYGTCVLTCMAT 292  

                   inlfgvKvygefEfwfaliKviaiigfiIvgavviilifgggpnng....
                   + ++gvK+  +f  +f+ + +++i++ + +      + + + p+n++   
   mKIAA1176   293 VVFVGVKYVNKFALVFLGCVILSILAIYAGV-----IKSAFDPPNFpicl 337  

                   ..................................................
                    ++++ ++++ +   +   +++++ +++  +   +++  + + ++  +++
   mKIAA1176   338 lgnrtlsrhgfdvcaklawegnetvttrlwglfcssrllnatcdeyftrn 387  

                   ...........................ll.fhaigfrylgdngatfkdnf
                   + ++ ++ ++  ++  +++  ++  +++   +++g  ++g + +t  d  
   mKIAA1176   388 nvteiqgipgaasglikenlwssyltkGViVERRGMPSVGLADGTPVDMD 437  

                   pggfapspgtgsFlgflsvfviaaFaFtGielvgiaAgEsknPrKaiPkA
                    ++   + +++    f     i++++ tGi+++ + +g++++ +K+iP +
   mKIAA1176   438 HPYVFSDMTSY----FTLLVGIYFPSVTGIMAGSNRSGDLRDAQKSIPTG 483  

                   ilqviwritifYilsllaigllv..pwndpgllaasasaFFdCkpdcsaS
                   ++++i+ +  +Yi s+++ g+++++++  +++ +a++             
   mKIAA1176   484 TILAIATTSAVYISSVVLFGACIegVVLRDKFGEAVNGN----------- 522  

                   pfviafkelgikglah..linaviLtaaLSaansslyagsRmlyslAqdg
                            g  +++++ +i+++ + ++ +a++ sl+ ++R l++ ++dg
   mKIAA1176   523 ------LVVGTLAWPSpwVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDG 566  

                   laPikkflkkvdksgvPlrAillstlisllavavlGsLiiliaslnpaap
                   + P+  +++  + +g+P  A+ll+++i  +++        liasl + ap
   mKIAA1176   567 IVPFLQVFGHGKANGEPTWALLLTACICEIGI--------LIASLDEVAP 608  

                   ivfnfllaisgliglivwllislshlrfRkafkyqgrsidelpfkaplgp
                   i + f+l  +++ +l++  + +l  +++R+ f+y+ + ++ l+  ++l+ 
   mKIAA1176   609 ILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSLCLAL 658  

                   lgpilvlaaliiilliqayyaflpvpkgpktwgaadfaalyltvplflii
                   ++ + +  al+++l++ ++y +  +++++k wg++ + ++ + +   l++
   mKIAA1176   659 MFICSWYYALVAMLIAGLIYKYIEYRGAEKEWGDGIRGLSLSAARYALLR 708  

                   ligyklhvknkkpkvlk<-*
                   l  +  h+kn++p++l+   
   mKIAA1176   709 LEEGPPHTKNWRPQLLV    725  

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