ROUGE

Gene/Protein Characteristic Table for mKIAA0812

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129222
Description :	Cadherin EGF LAG seven-pass G-type receptor 3 precursor.
Clone Name :	mbg15128 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5085 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1640 bp

Genome contig ID gi65519420f_108785481
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
GCGCTCTGTTTTGGGAATAAACTTCTATAGAAAAC
Flanking genome sequence
(113332 - 113381)
----+----*----+----*----+----*----+----*----+----*
ACTTGTTCCTCTTTCTGTCTCAGCTGTTGAGAATACTCACCCAGGATGAC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0812 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0812	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..3445
Length: 1147 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EDL21316	99.9	cadherin EGF LA...	Mus musculus
Q91ZI0	99.8	Cadherin EGF LA...	Mus musculus
EDL21317	99.8	cadherin EGF LA...	Mus musculus
NP_536685	99.8	cadherin EGF LA...	Mus musculus
O88278	97.4	Cadherin EGF LA...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220170	1.4e-57	38.3	mKIAA4041
AK220331	5.2e-44	45.2	mKIAA0279
AK122380	1.6e-20	25.8	mKIAA0821
AK129215	6.7e-20	27.2	mKIAA0786
AK122367	2.6e-15	25.8	mKIAA0768

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000203 312 365 PF01825 GPS

IPR000832 372 615 PF00002 GPCR

HMMSmart IPR000203 312 365 SM00303 GPS

ProfileScan IPR000203 313 365 PS50221 GPS

IPR000832 375 612 PS50261 GPCR

NULL 1086 1147 PS50324 NULL

ScanRegExp IPR000832 600 615 PS00650 GPCR

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000203	312	365	PF01825	GPS
IPR000832	372	615	PF00002	GPCR
HMMSmart	IPR000203	312	365	SM00303	GPS
ProfileScan	IPR000203	313	365	PS50221	GPS
IPR000832	375	612	PS50261	GPCR
NULL	1086	1147	PS50324	NULL
ScanRegExp	IPR000832	600	615	PS00650	GPCR

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 376 398 AVFTHVVVAVSVTALVLTAAVLL

409 431 GIHANVAAALGVAELLFLLGIHR

440 462 AVAILLHYFFLSTFAWLLVQGLH

478 499 MRFYHALGWGVPAVLLGLAVGL

522 543 FAGPIVLVIVMNGTMFLLAART

565 587 FLLLLLVSASWLFGLLAVNHSIL

594 616 AGLCGLQGLAVLLLFCVLNADAR

Method	From	To	amino acid sequence
SOSUI	376	398	AVFTHVVVAVSVTALVLTAAVLL
409	431	GIHANVAAALGVAELLFLLGIHR
440	462	AVAILLHYFFLSTFAWLLVQGLH
478	499	MRFYHALGWGVPAVLLGLAVGL
522	543	FAGPIVLVIVMNGTMFLLAART
565	587	FLLLLLVSASWLFGLLAVNHSIL
594	616	AGLCGLQGLAVLLLFCVLNADAR

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1640 bp
Genome contig ID	gi65519420f_108785481
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- GCGCTCTGTTTTGGGAATAAACTTCTATAGAAAAC
Flanking genome sequence (113332 - 113381)	----+--------+--------+--------+--------+----* ACTTGTTCCTCTTTCTGTCTCAGCTGTTGAGAATACTCACCCAGGATGAC

Gene/Protein Characteristic Table for mKIAA0812

Features of the cloned DNA sequence

Features of the protein sequence