ROUGE

Gene/Protein Characteristic Table for mKIAA0768

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK122367
Description :	Latrophilin 3 (Fragment).
Clone Name :	mbh03527 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4745 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1571 bp

Genome contig ID gi65498774f_80714607
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TTGTTTGCCGACCAATAAACAACTGATTGAGATTT
Flanking genome sequence
(335732 - 335781)
----+----*----+----*----+----*----+----*----+----*
AGAAGAGATTGCTTTGACGTATGTACTGTATTATCAAGTCCTCTTTTGAC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0768 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0768	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..3174
Length: 1057 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q80TS3	100.0	Latrophilin-3; ...	Mus musculus
BAE27870	99.9	unnamed protein...	Mus musculus
AAH88989	99.4	Latrophilin 3 [...	Mus musculus
XP_001491463	97.0	latrophilin 3 [...	Equus caballus
NP_056051	96.4	latrophilin 3 p...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK122380	9e-144	47.6	mKIAA0821
AK129215	1.3e-126	58.4	mKIAA0786
AK220170	4.1e-33	26.1	mKIAA4041
AK220331	1.2e-31	27.7	mKIAA0279
AK129222	2.3e-26	26.0	mKIAA0812

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001879 83 143 PF02793 Hormone receptor

IPR000203 402 454 PF01825 GPS

IPR000832 462 718 PF00002 GPCR

IPR003334 727 1057 PF02354 Latrophilin

HMMSmart IPR001879 82 147 SM00008 Hormone receptor

IPR000203 402 454 SM00303 GPS

ProfileScan IPR001879 86 142 PS50227 Hormone receptor

IPR000203 403 454 PS50221 GPS

IPR000832 465 715 PS50261 GPCR

ScanRegExp IPR000832 703 718 PS00650 GPCR

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001879	83	143	PF02793	Hormone receptor
IPR000203	402	454	PF01825	GPS
IPR000832	462	718	PF00002	GPCR
IPR003334	727	1057	PF02354	Latrophilin
HMMSmart	IPR001879	82	147	SM00008	Hormone receptor
IPR000203	402	454	SM00303	GPS
ProfileScan	IPR001879	86	142	PS50227	Hormone receptor
IPR000203	403	454	PS50221	GPS
IPR000832	465	715	PS50261	GPCR
ScanRegExp	IPR000832	703	718	PS00650	GPCR

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 465 487 LDVITWVGILLSLVCLLICIFTF

499 520 TIHKNLCISLFVAELLFLIGIN

534 556 LLHFFFLAAFTWMFLEGVQLYIM

571 590 FYLVGYGMPALIVAVSAAVD

610 632 WSFIGPATLIIMLNVIFLGIALY

660 682 IKSWVIGAIALLCLLGLTWAFGL

692 714 MAYLFTIFNSLQGMFIFIFHCVL

Method	From	To	amino acid sequence
SOSUI	465	487	LDVITWVGILLSLVCLLICIFTF
499	520	TIHKNLCISLFVAELLFLIGIN
534	556	LLHFFFLAAFTWMFLEGVQLYIM
571	590	FYLVGYGMPALIVAVSAAVD
610	632	WSFIGPATLIIMLNVIFLGIALY
660	682	IKSWVIGAIALLCLLGLTWAFGL
692	714	MAYLFTIFNSLQGMFIFIFHCVL

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1571 bp
Genome contig ID	gi65498774f_80714607
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- TTGTTTGCCGACCAATAAACAACTGATTGAGATTT
Flanking genome sequence (335732 - 335781)	----+--------+--------+--------+--------+----* AGAAGAGATTGCTTTGACGTATGTACTGTATTATCAAGTCCTCTTTTGAC

Gene/Protein Characteristic Table for mKIAA0768

Features of the cloned DNA sequence

Features of the protein sequence