hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15128/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0812  ( 1147 res)   mbg15128

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GPS      G-protein-coupled receptor proteolytic site     81.1    1.4e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GPS        1/1     312   365 ..     1    51 []    81.1  1.4e-19

Alignments of top-scoring domains:
GPS: domain 1 of 1, from 312 to 365: score 81.1, E = 1.4e-19
                   *->snpiCvfWdese....tgeWstrGCelvetnkpthttCsCnHLTsFA
                      s++iCv+Wd   +++++g W++r+Celv++n+ +h++C+C++ ++F+
   mKIAA0812   312    SKAICVQWDPPGptdqHGMWTARDCELVHRNG-SHARCRCSRTGTFG 357  

                   vLmdvspn<-*
                   vLmd+sp+   
   mKIAA0812   358 VLMDASPR    365  

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