ROUGE

Gene/Protein Characteristic Table for mKIAA0810

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	BC047928
Description :	Sad1/unc-84 protein-like 1.
Clone Name :	mpm11116 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 4021 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1257 bp

Genome contig ID gi65498774f_138113215
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
GCTATTGAGATGTTTAAATAAAAGAGTTAATTTTT
Flanking genome sequence
(134634 - 134683)
----+----*----+----*----+----*----+----*----+----*
AAAAGTGCATGTGCGATTTCAAGTGATTAATAAAAGTGTGTATTTCTTTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0810 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0810	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..2764
Length: 920 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EDL19167	100.0	unc-84 homolog ...	Mus musculus
Q9D666	100.0	Protein unc-84 ...	Mus musculus
BAE35723	99.9	unnamed protein...	Mus musculus
BAE39733	99.6	unnamed protein...	Mus musculus
EDL89780	94.2	unc-84 homolog ...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK172996	5.8e-43	38.0	mKIAA0668
AK220494	1.3e-20	34.8	mKIAA4118

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR012919 784 918 PF07738 Sad1/UNC-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012919	784	918	PF07738	Sad1/UNC-like

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 363 385 AAGWSVAEAVWSVLWLAVSAPGK

410 432 VFLLTRCLRNICKVFVLLLPLLL

Method	From	To	amino acid sequence
SOSUI	363	385	AAGWSVAEAVWSVLWLAVSAPGK
410	432	VFLLTRCLRNICKVFVLLLPLLL

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1257 bp
Genome contig ID	gi65498774f_138113215
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- GCTATTGAGATGTTTAAATAAAAGAGTTAATTTTT
Flanking genome sequence (134634 - 134683)	----+--------+--------+--------+--------+----* AAAAGTGCATGTGCGATTTCAAGTGATTAATAAAAGTGTGTATTTCTTTT

Gene/Protein Characteristic Table for mKIAA0810

Features of the cloned DNA sequence

Features of the protein sequence