FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0810.ptfa, 920 aa
 vs ./tmplib.26680 library

1768097 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.8441+/-0.00531; mu= 8.0637+/- 0.354
 mean_var=142.9070+/-33.900, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1073

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0668  ( 739 res)   mfj01241                   ( 739) 1026  171 5.8e-43
mKIAA4118  ( 248 res)   mfj41141                   ( 248)  539   95 1.3e-20


>>mKIAA0668  ( 739 res)   mfj01241                        (739 aa)
 initn: 1171 init1: 965 opt: 1026  Z-score: 863.7  bits: 170.8 E(): 5.8e-43
Smith-Waterman score: 1139;  37.961% identity (44.172% ungapped) in 569 aa overlap (367-918:232-737)

        340       350       360       370       380       390      
mKIAA0 HRVAGAMGRLCIYTGDLLVQALRRTRAAGWSVAEAVWSVLWLAVSAPGKAASGTFWWLGS
                                     :.:  . : .:  :. ::.  .  .::.:.
mKIAA0 FFGSSSGYSSEDDLAGYTDSDQHSSGSRLRSAASRAGSFVWTLVTFPGRLFGLLYWWIGT
             210       220       230       240       250       260 

        400       410          420       430       440             
mKIAA0 GWYQFVTLISWLNVFLLTRCLR---NICKVFVLLLPLLLLLGAGVSLWGQGNFF-----S
        ::...:  : :.::.:::  .   :. . . .:: :::: :   . :   .:.     .
mKIAA0 TWYRLTTAASLLDVFVLTRSRHFSLNLKSFLWFLLLLLLLTGLTYGAW---HFYPLGLQT
             270       280       290       300          310        

      450        460       470       480       490       500       
mKIAA0 LLP-VLNWTAMQPTQRVDDSKGMHRPGPLPPSPPPKVDHKASQWPQESDMGQKVASLSAQ
       : : :..: : . ...               .:    .. :::  :     :.: :   .
mKIAA0 LQPAVVSWWAAKESRK---------------QPEVWESRDASQHFQAE---QRVLS---R
      320       330                      340       350             

       510           520       530       540       550       560   
mKIAA0 CHNHDERL----AELTVLLQKLQIRVDQVDDGREGLSLWVKNVVGQHLQEMGTIEPPDAK
        :. ..::    :...   ::  ::.....  :.: .    .   .: . .. .:   ..
mKIAA0 VHSLERRLEALAADFSSNWQKEAIRLERLEL-RQGAAGHGGGSSLSHEDALSLLEGLVSR
       360       370       380        390       400       410      

           570        580       590       600       610       620  
mKIAA0 TDFMTFHHD-HEVRLSNLEDVLRKLTEKSEAIQKELEETKLKAGSRDEEQPLLDRVQHLE
        .  :...: ..  ...... :  :  . .  ...: .  ..:....:      :::.:.
mKIAA0 RE-ATLKEDLRRDTVAHIQEELATLRAEHHQDSEDLFKKIVQASQESEA-----RVQQLK
         420       430       440       450       460            470

            630       640       650       660       670       680  
mKIAA0 LELNLLKSQLSDWQHLKTSCEQAGARIQETVQLMFSEDQQGGSLEWLLEKLSSRFVSKDE
        : .. .::. :: .                :.....    :.   ::..        ::
mKIAA0 TEWKV-ESQFPDWIR----------------QFLLGDR---GARSGLLQR--------DE
               480                       490          500          

            690       700       710          720       730         
mKIAA0 LQVLLHDLELKLLQNITHHITVTGQAPTSEAIVS---AVNQAGISGITEAQAHIIVNNAL
       ... :..:: :.:   :.   . :.. . :: .:    ... :: :.:: :.: ::..::
mKIAA0 MHAQLQELENKIL---TKMAEMQGKS-AREAAASLGQILQKEGIVGVTEEQVHRIVKQAL
            510          520        530       540       550        

     740       750       760       770       780       790         
mKIAA0 KLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALLSLFGVPLWYFSQSPRVVIQPDI
       . ::.:. ::::.::::::.:..:::::::::::::::::::.:::: ::::::..:::.
mKIAA0 QRYSEDRIGMVDYALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDV
      560       570       580       590       600       610        

     800       810       820       830       840       850         
mKIAA0 YPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTLSPTGNISSAPKDFAVYGLETEYQ
       .:::::::.: ::. ::::: .: ::. :.::.::.:::...:::::::::..:.. . :
mKIAA0 HPGNCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQ
      620       630       640       650       660       670        

     860       870       880       890       900       910         
mKIAA0 EEGQPLGRFTYDQEGDSLQMFHTLERPDQAFQIVELRVLSNWGHPEYTCLYRFRVHGEPI
       .::  :: :.:::.:. .: :.       ..:.::::.:.:::::::::.::::::::: 
mKIAA0 QEGTLLGTFAYDQDGEPIQTFYFQASKMATYQVVELRILTNWGHPEYTCIYRFRVHGEPA
      680       690       700       710       720       730        

     920
mKIAA0 Q
        
mKIAA0 H
        

>>mKIAA4118  ( 248 res)   mfj41141                        (248 aa)
 initn: 543 init1: 320 opt: 539  Z-score: 462.6  bits: 95.0 E(): 1.3e-20
Smith-Waterman score: 539;  34.783% identity (35.242% ungapped) in 230 aa overlap (688-916:2-229)

       660       670       680       690       700       710       
mKIAA0 SEDQQGGSLEWLLEKLSSRFVSKDELQVLLHDLELKLLQNITHHITVTGQAPTS-EAIVS
                                     :  .:   ..  :..   ::   . .: ..
mKIAA4                              PHGTHLPNYSQYHHRVHSQGQQLQQLQAELN
                                            10        20        30 

        720       730       740       750       760       770      
mKIAA0 AVNQAGISGITEAQAHIIVNNALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTAL
        ...  .:..  :... ... ...  ..: .   :.:: : :.::   . :  :: ... 
mKIAA4 KLHKE-VSSVRAAHSERVAKLVFQRLNEDFVRKPDYALSSVGASIDLEKTSSDYEDQNTA
               40        50        60        70        80        90

        780       790       800       810       820       830      
mKIAA0 LSLFGVPLWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTL
            . .: ... : :...::..:::::::.:..: .:.::  ..  . .:..: : :.
mKIAA4 YFWNRLSFWNYARPPSVILEPDVFPGNCWAFEGDKGQVVIRLPGHVQLSDITLQHPPPTV
              100       110       120       130       140       150

        840       850       860       870       880       890      
mKIAA0 SPTGNISSAPKDFAVYGLETEYQEEGQPLGRFTYDQEGDSLQMFHTLERPDQAFQIVELR
       . ::. ::::.:::::::... . :   ::.: .: . . .: ::  . : .::  :...
mKIAA4 AHTGGASSAPRDFAVYGLQADDETE-VFLGKFIFDVQKSEIQTFHLQNDPPSAFPKVKIQ
              160       170        180       190       200         

        900       910       920               
mKIAA0 VLSNWGHPEYTCLYRFRVHGEPIQ               
       .:::::::..::::: :.::                   
mKIAA4 ILSNWGHPRFTCLYRVRAHGVRTSEWADDNATGVTGGPH
     210       220       230       240        




920 residues in 1 query   sequences
1768097 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:29:14 2006 done: Mon Mar 27 10:29:15 2006
 Scan time:  1.020 Display time:  0.060

Function used was FASTA [version 3.4t11 Apr 17, 2002]