ROUGE

Gene/Protein Characteristic Table for mKIAA0255

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AB093220
Description :	transmembrane 9 superfamily protein member 4.
Clone Name :	mph00815 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 3640 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1708 bp

Genome contig ID gi66880554f_152535825
PolyA signal sequence
(AATAAA,-33)
+----*----+----*----+----*----+----
TAAATAAAATGCCATTGTCCTGTTGTCTCAACTCG
Flanking genome sequence
(131578 - 131627)
----+----*----+----*----+----*----+----*----+----*
AATGCAAGGGTGCGGATTGAAGTGTGATGGTTTCACCAGGTGGGTTGAGT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0255 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0255	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..1932
Length: 643 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAC39789	99.8	unnamed protein...	Mus musculus
BAC33261	99.8	unnamed protein...	Mus musculus
BAE42487	99.8	unnamed protein...	Mus musculus
AAI10310	99.8	Transmembrane 9...	Mus musculus
Q4KLL4	98.9	Transmembrane 9...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220279	1.6e-70	36.4	mKIAA4036

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004240 54 601 PF02990 Nonaspanin (TM9SF)

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004240	54	601	PF02990	Nonaspanin (TM9SF)

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 1 20 MAAAMIWWPRFLLLLCLTCK

283 305 SIINSVVVVFFLSGILSMIIIRT

346 368 SSLLGSGIQLFCMILIVIFVAML

379 401 LMTTACFLFMFMGVFGGFSAGRL

418 439 ATLYPGVVFGICFVLNCFIWGK

447 469 FPTMVALLCMWFGISLPLVYLGY

502 524 VGILMAGILPFGAMFIELFFIFS

537 559 FLFLVFIILVVSCSQISIVMVYF

572 594 NFLVSGGSAFYVLVYAIFYFVNK

608 630 GYTTLMVLSFWLLTGTIGFYAAY

Method	From	To	amino acid sequence
SOSUI	1	20	MAAAMIWWPRFLLLLCLTCK
283	305	SIINSVVVVFFLSGILSMIIIRT
346	368	SSLLGSGIQLFCMILIVIFVAML
379	401	LMTTACFLFMFMGVFGGFSAGRL
418	439	ATLYPGVVFGICFVLNCFIWGK
447	469	FPTMVALLCMWFGISLPLVYLGY
502	524	VGILMAGILPFGAMFIELFFIFS
537	559	FLFLVFIILVVSCSQISIVMVYF
572	594	NFLVSGGSAFYVLVYAIFYFVNK
608	630	GYTTLMVLSFWLLTGTIGFYAAY

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1708 bp
Genome contig ID	gi66880554f_152535825
PolyA signal sequence (AATAAA,-33)	+--------+--------+----*----+---- TAAATAAAATGCCATTGTCCTGTTGTCTCAACTCG
Flanking genome sequence (131578 - 131627)	----+--------+--------+--------+--------+----* AATGCAAGGGTGCGGATTGAAGTGTGATGGTTTCACCAGGTGGGTTGAGT

Gene/Protein Characteristic Table for mKIAA0255

Features of the cloned DNA sequence

Features of the protein sequence