ROUGE

Gene/Protein Characteristic Table for mKIAA4036

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220279
Description :	Transmembrane 9 superfamily protein member 3 precursor.
Clone Name :	mid20012 [Vector Info]
Source :	Mouse adult pancreatic islet

Features of the cloned DNA sequence	Description

Length: 3166 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1276 bp

Genome contig ID gi65553144r_40658168
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
ATTGCTTTAGAATGTTCAAATAAAATTTCCTGACC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATTGTTTTGTGACAGTAGATGTGTTTATAATTTGAAGATACCTGCTCA

Genomic structure deduced by Blast search against draft genome sequences

Features of the protein sequence	Description

Coding region: 1..1887
Length: 629 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_220013	99.5	similar to Tran...	Rattus norvegicus
Q9ET30	100.0	Transmembrane 9...	Mus musculus
XP_001101439	99.7	endomembrane pr...	Macaca mulatta
XP_849773	99.3	similar to Tran...	Canis lupus fam...
Q9HD45	99.0	Transmembrane 9...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AB093220	2.7e-67	36.4	mKIAA0255

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004240 96 587 PF02990 Nonaspanin (TM9SF)

ProfileScan NULL 23 44 PS50323 NULL

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004240	96	587	PF02990	Nonaspanin (TM9SF)
ProfileScan	NULL	23	44	PS50323	NULL

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 265 287 SIFNSFMMVIFLVGLVSMILMRT

331 353 FSSLIGSGCQIFAVSLIVIIVAM

400 422 FIGAFLIPAMVCGTAFFINFIAI

434 456 TMVAVCCICFFVILPLNLVGTIL

487 509 AVIVCLGGILPFGSIFIEMYFIF

523 545 FMMLVLVILCIVTVCVTIVCTYF

559 580 FLSAASTAIYVYMYSFYYYFFK

592 614 YFGYMAVFSTALGIMCGAIGYMG

Method	From	To	amino acid sequence
SOSUI	265	287	SIFNSFMMVIFLVGLVSMILMRT
331	353	FSSLIGSGCQIFAVSLIVIIVAM
400	422	FIGAFLIPAMVCGTAFFINFIAI
434	456	TMVAVCCICFFVILPLNLVGTIL
487	509	AVIVCLGGILPFGSIFIEMYFIF
523	545	FMMLVLVILCIVTVCVTIVCTYF
559	580	FLSAASTAIYVYMYSFYYYFFK
592	614	YFGYMAVFSTALGIMCGAIGYMG

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	1276 bp
Genome contig ID	gi65553144r_40658168
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- ATTGCTTTAGAATGTTCAAATAAAATTTCCTGACC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAATTGTTTTGTGACAGTAGATGTGTTTATAATTTGAAGATACCTGCTCA

Gene/Protein Characteristic Table for mKIAA4036

Features of the cloned DNA sequence

Features of the protein sequence