hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph00815/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0255 ( 643 res) mph00815 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EMP70 Endomembrane protein 70 1199.4 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EMP70 1/1 54 601 .. 1 607 [] 1199.4 0 Alignments of top-scoring domains: EMP70: domain 1 of 1, from 54 to 601: score 1199.4, E = 0 *->epYeYYserLpFCrPekgtiekksEsLGYEVLfGDRivnSpYklkfl +pYeYYs LpFC+P k i++k+E+LG EVL+GDRivn+p+++ ++ mKIAA0255 54 LPYEYYS--LPFCQPIK--ITYKAENLG-EVLRGDRIVNTPFQVLMN 95 eekecevlCkvkkypldkltkedvklfrkaIekeYyvqwliDnLPvatfv +ek+cevlC+++++p +lt e+++l++++I++eYyv+++ DnLPvat++ mKIAA0255 96 SEKKCEVLCNQSNKPI-TLTVEQSRLVAERITEEYYVHLIADNLPVATRL 144 gkvdnkd.......ykgvgfesGfplGeqgidieAcplnnlyKteeKyyl + + + ++++++++k+v+fe+G++lG++ +++K+yl mKIAA0255 145 ELYSSNRdsddkkkEKDVQFEHGYRLGFT--------------DVNKIYL 180 fnHldfvieYHdrdndddqlesyRivgieVkprSvkhsselknde.stCs +nHl f+++YH++d+++dq+++yR+v++eV p+S++ + +lk e+s+C+ mKIAA0255 181 HNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLE-DLKTGEkSSCT 229 ltskyssspqeldEgkendgEleltFTYSVkWkesdvkWasRWDkYLdsg l+++ +s pqe+d+ ken +l+FTYSV+W+esd+kWasRWD+YL+ mKIAA0255 230 LPEGANSLPQEIDPTKEN----QLYFTYSVHWEESDIKWASRWDTYLT-- 273 ffDmhdlqIHWFSIiNSlviVlFLsGiVsmIlmRTLrrDiarYneldede m d+qIHWFSIiNS+v+V+FLsGi+smI++RTLr+Dia+Yn++d++e mKIAA0255 274 ---MSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIE 320 eaeGIEteDDlddDaqEEsGWKLVHGDVFRpPrPNLFnpmLLSalvGsGv D++EEsGWKLVHGDVFRpP+ +pm+LS l+GsG+ mKIAA0255 321 -------------DTMEESGWKLVHGDVFRPPQ----YPMILSSLLGSGI 353 QlllmvlvtivfAclGfLsPsnRGsLlTaaivlYaltGfvAGYvSarlYk Ql++m+l++i+ A+lG+LsPs+RG+L+T+a++l++++G+++G+ ++rlY+ mKIAA0255 354 QLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYR 403 tfkGkrkkWkrnliLTaflfPGivFliffvLNfvlWgkgSSgAvPFgTmv t+kG+ +Wk+ +++Ta+l+PG+vF+i+fvLN+++Wgk+SSgAvPF Tmv mKIAA0255 404 TLKGH--RWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMV 451 aLlllWflvsvPLtflGgivGfNIPLPQRkragefehPvRTNqIPRqIPe aLl++Wf++s+PL++lG+++Gf Rk+++ ++PvRTNqIPRqIPe mKIAA0255 452 ALLCMWFGISLPLVYLGYYFGF------RKQPY--DNPVRTNQIPRQIPE 493 RqkWYlsplpgilmGGiLPFGaIfIELfFIftSlWlhkTTiYYmFGFLFl q+WY+++++gilm+GiLPFGa+fIELfFIf+++W+++ +YY+FGFLFl mKIAA0255 494 -QRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQ--FYYLFGFLFL 540 VFiILvvvcsevtIvlTYFqLRFCaEDKVVRYrWWWRSFltsGfStAvYv VFiILvv+cs+++Iv++YFqL CaED YrWWWR+Fl+sG ++A+Yv mKIAA0255 541 VFIILVVSCSQISIVMVYFQL--CAED----YRWWWRNFLVSG-GSAFYV 583 FlYSifYfftKlkisGfi<-* ++Y+ifYf++Kl+i +fi mKIAA0255 584 LVYAIFYFVNKLDIVEFI 601 //