FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0255.ptfa, 643 aa
 vs ./tmplib.26680 library

1768374 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6045+/-0.00412; mu= 20.7278+/- 0.278
 mean_var=75.2736+/-17.625, 0's: 0 Z-trim: 3  B-trim: 87 in 1/35
 Lambda= 0.1478

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4036  ( 629 res)   mid20012                   ( 629) 1179  262 1.6e-70


>>mKIAA4036  ( 629 res)   mid20012                        (629 aa)
 initn: 948 init1: 651 opt: 1179  Z-score: 1358.3  bits: 261.5 E(): 1.6e-70
Smith-Waterman score: 1184;  36.439% identity (41.714% ungapped) in 601 aa overlap (53-643:95-629)

             30        40        50        60          70        80
mKIAA0 TFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPIK--ITYKAENLGEVL
                                     :  :.:.:::::   :  :..  :.:::.:
mKIAA4 RARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEAL
           70        80        90       100       110       120    

               90       100       110       120       130       140
mKIAA0 RGDRIVNTPFQVLMNSEKKCEVLCNQSNKPITLTVEQSRLVAERITEEYYVHLIADNLPV
       .: ..  . ... ....    . :.     : :  :.    .  : ..:. ..  :.::.
mKIAA4 QGVELEFSGLDIKFKDDVMPGTYCE-----IDLDKEKRDAFVYAIKNHYWYQMYIDDLPI
          130       140            150       160       170         

              150       160       170       180       190       200
mKIAA0 ATRLELYSSNRDSDDKKKEKDVQFEHGYRLGFTDVNKIYLHNHLSFILYYHREDMEEDQE
                                 :  .: .:                  :. :.   
mKIAA4 W-------------------------GI-VGEAD------------------ENGEDYYL
     180                                                   190     

              210       220       230       240       250       260
mKIAA0 HTYRVVRFEVIPQSIRLEDLKTGEKSSCTLPEGANSLPQEIDPTKENQLYFTYSVHWEES
        ::.  ..:.  .. :. :..          ::  .:     :. . :.  .:::.:..:
mKIAA4 WTYK--KLEIGFNGNRIVDVNL-------TSEGKVKLV----PNTKIQM--SYSVKWKKS
           200       210              220           230         240

              270         280       290       300       310        
mKIAA0 DIKWASRWDTYLTMSDVQ--IHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKE--
       :.:. .:.: ::  :  :  ::::::.:: ..:.:: :..:::..:::::: : :.::  
mKIAA4 DVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEE
              250       260       270       280       290       300

         320        330       340       350       360       370    
mKIAA0 -DDIE-DTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPS
        ::.. :  .: ::: :::::::: ..:.:.:::.::: :.: . ::::.:::.  :  .
mKIAA4 MDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLY-T
              310       320       330       340       350          

          380       390       400       410       420       430    
mKIAA0 SRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNC
        ::....:: :..   .  .:. .: ::    :.:: :  :  : : :..: :  : .: 
mKIAA4 ERGSMLSTAIFVYAATSPVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINF
     360       370       380       390       400       410         

          440       450       460       470         480       490  
mKIAA0 FIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFG--FRKQPYDNPVRTNQIPRQIP
       .    :.: :.:: ::::. :. : . :::  .:  .:  .  :: . : :.: .:: ::
mKIAA4 IAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQP-NFPCRVNAVPRPIP
     420       430       440       450       460        470        

            500       510       520       530       540       550  
mKIAA0 EQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQI
       :..:.:.  : . ..::::::..:::..:::...:  ..::..::..::..:: .    .
mKIAA4 EKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCV
      480       490       500       510       520       530        

            560       570       580       590       600       610  
mKIAA0 SIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTL
       .:: .:: : :::::: : .:: ....:.:: .:...:.  :  .  .. . .:::: ..
mKIAA4 TIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAV
      540       550       560       570       580       590        

            620       630       640   
mKIAA0 MVLSFWLLTGTIGFYAAYMFVRKIYAAVKID
       .  .. .. :.::....  ::::::. ::::
mKIAA4 FSTALGIMCGAIGYMGTSAFVRKIYTNVKID
      600       610       620         




643 residues in 1 query   sequences
1768374 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:15:55 2006 done: Mon Mar 27 10:15:56 2006
 Scan time:  0.800 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]