ROUGE

Gene/Protein Characteristic Table for mFLJ00136

Link to : NEDO \| InGAP \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AY263158
Description :	transmembrane channel-like protein 6.
Clone Name :	mph00646 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 2836 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 257 bp

Genome contig ID gi65527427r_117487223
PolyA signal sequence
(ATTAAA,-22)
+----*----+----*----+----*----+----
GTGTGCACCCCCTATTAAATGGGTTTTGCTACATG
Flanking genome sequence
(99857 - 99808)
----+----*----+----*----+----*----+----*----+----*
AGTTTGTGCTTCAGGATGAGCTTGGGACCTGCACCTGTCCTGTGCGTGTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00136 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00136	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 6..2579
Length: 857 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7TN60	100.0	Transmembrane c...	Mus musculus
CAM15524	99.9	transmembrane c...	Mus musculus
AAP69875	99.8	transmembrane c...	Mus musculus
EDM06725	92.7	rCG32673, isofo...	Rattus norvegicus
EDL34626	99.9	transmembrane c...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220211	1.4e-14	26.2	mFLJ00400

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR012496 586 692 PF07810 TMC

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012496	586	692	PF07810	TMC

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 252 274 RYTCMLALHSLGLALLSGLYAAR

293 315 SYFLFLKTLLAFNALMLLPLLAF

388 410 AYLFTMGATFFLTCIILVYSMSH

477 499 VVVLGLGWLLCLGSTMGCTVAVL

517 539 EALALPLVVSVLNLGASYLFRGL

550 572 LEVYMAICRNLILKMAVLGVLCY

598 620 FMVVDFIFMLLDSLFGELVWRLI

650 672 WLGVLFSPLLPAVQILRLLFLFH

695 717 STVFLTLLCFPSFLGAAVFLCYA

766 788 ENTFFLFLASALLLAVIYFNIQV

Method	From	To	amino acid sequence
SOSUI	252	274	RYTCMLALHSLGLALLSGLYAAR
293	315	SYFLFLKTLLAFNALMLLPLLAF
388	410	AYLFTMGATFFLTCIILVYSMSH
477	499	VVVLGLGWLLCLGSTMGCTVAVL
517	539	EALALPLVVSVLNLGASYLFRGL
550	572	LEVYMAICRNLILKMAVLGVLCY
598	620	FMVVDFIFMLLDSLFGELVWRLI
650	672	WLGVLFSPLLPAVQILRLLFLFH
695	717	STVFLTLLCFPSFLGAAVFLCYA
766	788	ENTFFLFLASALLLAVIYFNIQV

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	257 bp
Genome contig ID	gi65527427r_117487223
PolyA signal sequence (ATTAAA,-22)	+--------+--------+----*----+---- GTGTGCACCCCCTATTAAATGGGTTTTGCTACATG
Flanking genome sequence (99857 - 99808)	----+--------+--------+--------+--------+----* AGTTTGTGCTTCAGGATGAGCTTGGGACCTGCACCTGTCCTGTGCGTGTT

Gene/Protein Characteristic Table for mFLJ00136

Features of the cloned DNA sequence

Features of the protein sequence