FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mFLJ00136.ptfa, 857 aa
 vs ./tmplib.26680 library

1768160 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1454+/-0.00453; mu= 21.3077+/- 0.305
 mean_var=85.6236+/-18.819, 0's: 0 Z-trim: 1  B-trim: 4 in 1/35
 Lambda= 0.1386

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00400  ( 603 res)   mlj03177                   ( 603)  329   76 1.4e-14


>>mFLJ00400  ( 603 res)   mlj03177                        (603 aa)
 initn: 387 init1: 190 opt: 329  Z-score: 353.8  bits: 76.0 E(): 1.4e-14
Smith-Waterman score: 483;  26.151% identity (30.344% ungapped) in 608 aa overlap (295-857:2-570)

          270       280       290       300       310              
mFLJ00 ALLSGLYAARPWRYALKQIGGQFGSSVLSYFLFLKTLLAFNALMLLPLLAF---------
                                     .: : :.:    ..::::. .         
mFLJ00                              LLLNLLTMLLTACFVLLPLVWLRPPELGPAL
                                            10        20        30 

          320       330         340       350       360       370  
mFLJ00 -LVGVQAAFPPDPAGPVPTFSG--LELLTGGGRFTHTVMYYGYYSNSTLSPSCDAPREGG
        :.:.: .  : : . .: : .   ..::: . :..: ..:: :            : : 
mFLJ00 KLTGLQCSSSPLPQSDIPRFHNPLWNILTGRA-FNNTYLFYGAY------------RAGP
              40        50        60         70                    

            380       390        400       410       420        430
mFLJ00 QCSPRLGSLPYNMPLAYLFT-MGATFFLTCIILVYSMSHSFGESYRVGST-KGIHALTVF
       . : .     :.. ::::.. :   ..  : ::   :.... ..  .:.  .   .  ::
mFLJ00 ESSSE-----YSIRLAYLLSPMVCLLLCFCGIL-QRMAEGLPQQTLLGQRYRTPLSAKVF
       80             90       100        110       120       130  

              440       450       460             470       480    
mFLJ00 CSWDYKVTQKRASRVQQDSICTQLKELLAEW------HLRKRPRSVCGQLRQVVVLGLGW
        :::. .   .:. ...  : ..::  : :       . . : ...:   : .. :  . 
mFLJ00 SSWDFCIRVWEAATIKKHEISNELKMELEEGRRVELAQQQTRAQKAC---RLLTYLRTNI
            140       150       160       170          180         

          490       500       510       520       530       540    
mFLJ00 LLCLGSTMGCTVAVLTFSEVMIQRPASGGQGVEALALPLVVSVLNLGASYLFRGLATLER
       :. :  ..:   :..  ..   .    .   :     : :.:..:. .  ::  :  :: 
mFLJ00 LIVL-LVVGAISAIFWATKYSQDNKEESLFLVLQYLPPGVISLVNFLGPQLFTVLIQLEN
     190        200       210       220       230       240        

          550       560       570             580               590
mFLJ00 HDSPVLEVYMAICRNLILKMAVLGVLCYHW------LGRRVATLQG--------QCWEDF
       .  :  :: ...   ..::.: ::.. .        .::  .. ..        ::::. 
mFLJ00 YP-PGTEVNLTLIWCVVLKLASLGMFSFSLGQTVLCIGRNKTSCESYGYNACDYQCWENS
      250        260       270       280       290       300       

              600       610       620           630       640      
mFLJ00 VGQELYRFMVVDFIFMLLDSLFGELVWRLISEKK----LKRGQKPEFDIARNVLDLIYGQ
       ::.:::.... .:.. .  ...  :  ::. :.         .. :: . .::::.. .:
mFLJ00 VGEELYKLIIFNFLLTVAFAFLVSLPRRLLVERFSGWFWTWLDREEFLVPKNVLDIVAAQ
       310       320       330       340       350       360       

        650       660       670       680        690       700     
mFLJ00 TLTWLGVLFSPLLPAVQILRLLFLFHIKKASLMANCQA-PRRPWLASHMSTVFLTLLCFP
       :.::.:... :::: .. . :.. :.::: .:. : .: :::   .:  :: :. :. . 
mFLJ00 TVTWMGLFYCPLLPLLNSVFLFLTFYIKKYTLLRNSRASPRRFRASS--STFFFHLVLLL
       370       380       390       400       410         420     

         710       720       730       740       750       760     
mFLJ00 SFLGAAVFLCYAVWQVRPSSTCGPFRTLNTMYEAGTVWVRRLEHAGSGASWLPWL--HHF
       ..: ::: : :.. ... :  :: : . .. ...    :  :.    .   : .:  : :
mFLJ00 GLLLAAVPLAYVISSTHSSWDCGLFTNYSAPWQVVPELVA-LQLPLPSQRALRYLSSHAF
         430       440       450       460        470       480    

           770       780       790       800       810       820   
mFLJ00 LVENTFFLFLASALLLAVIYFNIQVVKGQRKVICLLKEQIRNEGEDKIFLINKLHSVYEE
           .: :..   ::  :.   :.  ... ..:  :..:.  . ..:  :.. :  .  :
mFLJ00 ----SFPLLI---LLSIVLTVCISQSRANARAIQGLRKQLVWQVQEKWHLVDDLSRLLPE
              490          500       510       520       530       

           830       840       850                                 
mFLJ00 EGRSRPGRTQDATEPPAWHEDGGDQKEPC----NPRSP                      
        .  .::  .. .  :     :     ::    .::.:                      
mFLJ00 LS-PEPGSPHSRASRPRSFCPG----FPCPGSPGPRTPRLAPSNRLSSSSLGAPSASVPA
        540       550           560       570       580       590  

mFLJ00 SRFHFPSRTEL
            600   




857 residues in 1 query   sequences
1768160 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:07:15 2006 done: Mon Mar 27 10:07:16 2006
 Scan time:  0.910 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]