ROUGE

Gene/Protein Characteristic Table for mFLJ00400

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220211
Description :	epidermodysplasia verruciformis 2. transmembrane channel-like gene family 8.
Clone Name :	mlj03177 [Vector Info]
Source :	Mouse adult splenocytes

Features of the cloned DNA sequence	Description

Length: 2258 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 1249 bp

Genome contig ID gi65527427f_117504967
PolyA signal sequence
(TATAAA,-21)
+----*----+----*----+----*----+----
TCATGGATGCAATTTATAAATATATATATATATGT
Flanking genome sequence
(109237 - 109286)
----+----*----+----*----+----*----+----*----+----*
ATATATTTGGAAATACTTGAATTTCTTGGACAAGAGTTGCTCTCAGAAAC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00400 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00400	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 2..1006, 1134..1940
Length: 603 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD90136	100.0	mFLJ00400 prote...	Mus musculus
CAQ12614	100.0	transmembrane c...	Mus musculus
BAE42658	99.8	unnamed protein...	Mus musculus
Q7TN58	99.7	Transmembrane c...	Mus musculus
AAP69879	99.3	transmembrane c...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AY263158	8.4e-11	25.5	mFLJ00136

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR012496 303 413 PF07810 TMC

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012496	303	413	PF07810	TMC

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 2 24 LLNLLTMLLTACFVLLPLVWLRP

85 107 SIRLAYLLSPMVCLLLCFCGILQ

186 207 RTNILIVLLVVGAISAIFWATK

221 243 LQYLPPGVISLVNFLGPQLFTVL

259 281 LIWCVVLKLASLGMFSFSLGQTV

312 333 LYKLIIFNFLLTVAFAFLVSLP

366 388 AQTVTWMGLFYCPLLPLLNSVFL

416 438 TFFFHLVLLLGLLLAAVPLAYVI

482 504 HAFSFPLLILLSIVLTVCISQSR

Method	From	To	amino acid sequence
SOSUI	2	24	LLNLLTMLLTACFVLLPLVWLRP
85	107	SIRLAYLLSPMVCLLLCFCGILQ
186	207	RTNILIVLLVVGAISAIFWATK
221	243	LQYLPPGVISLVNFLGPQLFTVL
259	281	LIWCVVLKLASLGMFSFSLGQTV
312	333	LYKLIIFNFLLTVAFAFLVSLP
366	388	AQTVTWMGLFYCPLLPLLNSVFL
416	438	TFFFHLVLLLGLLLAAVPLAYVI
482	504	HAFSFPLLILLSIVLTVCISQSR

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	1249 bp
Genome contig ID	gi65527427f_117504967
PolyA signal sequence (TATAAA,-21)	+--------+--------+----*----+---- TCATGGATGCAATTTATAAATATATATATATATGT
Flanking genome sequence (109237 - 109286)	----+--------+--------+--------+--------+----* ATATATTTGGAAATACTTGAATTTCTTGGACAAGAGTTGCTCTCAGAAAC

Gene/Protein Characteristic Table for mFLJ00400

Features of the cloned DNA sequence

Features of the protein sequence