ROUGE

Gene/Protein Characteristic Table for mFLJ00098

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK131129
Description :	Solute carrier family 12 member 7.
Clone Name :	mpg00643 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 5082 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1806 bp

Genome contig ID gi65535943f_69723603
PolyA signal sequence
(AGTAAA,-20)
+----*----+----*----+----*----+----
CTTTGTTAGTAGCAGAGTAAAGTTCTATAAAATAT
Flanking genome sequence
(153116 - 153165)
----+----*----+----*----+----*----+----*----+----*
AAATGTTTAAGGAACTTCGTGTGCCTCATTTCCATAGAATTCAGTGGTGG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00098 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00098	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..3276
Length: 1091 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD21379	100.0	mFLJ00098 prote...	Mus musculus
Q9WVL3	100.0	Solute carrier ...	Mus musculus
BAE29061	99.9	unnamed protein...	Mus musculus
Q5RK27	98.7	Solute carrier ...	Rattus norvegicus
XP_001071999	98.3	similar to Solu...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK122460	0	72.4	mKIAA1176

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004841 131 704 PF00324 Amino acid permease-associated region

HMMTigr IPR004842 53 1091 TIGR00930 Na-K-Cl cotransporter superfamily

ProfileScan IPR002293 122 605 PS50285 Amino acid/polyamine transporter I

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004841	131	704	PF00324	Amino acid permease-associated region
HMMTigr	IPR004842	53	1091	TIGR00930	Na-K-Cl cotransporter superfamily
ProfileScan	IPR002293	122	605	PS50285	Amino acid/polyamine transporter I

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 129 151 FIGVYLPCLQNILGVILFLRLTW

164 186 IVAMCCTCTMLTAISMSAIATNG

211 233 LCFYLGTTFAGAMYILGTIEIFL

258 280 NMRVYGSCALALMAVVVFVGVKY

285 307 ALVFLACVVLSILAIYAGVIKTA

336 358 VVSNGTVTTALWRLFCNGSSLGA

419 441 YVLTDIMTYFTMLVGIYFPSVTG

464 486 ILAIVTTSFIYLSCIVLFGACIE

501 523 NLVIGMLAWPSPWVIVIGSFFST

564 586 WALLLTALICETGILIASLDSVA

589 611 LSMFFLMCYMFVNLACAVQTLLR

630 652 GMSLCLALMFICSWYYALFAMLI

Method	From	To	amino acid sequence
SOSUI	129	151	FIGVYLPCLQNILGVILFLRLTW
164	186	IVAMCCTCTMLTAISMSAIATNG
211	233	LCFYLGTTFAGAMYILGTIEIFL
258	280	NMRVYGSCALALMAVVVFVGVKY
285	307	ALVFLACVVLSILAIYAGVIKTA
336	358	VVSNGTVTTALWRLFCNGSSLGA
419	441	YVLTDIMTYFTMLVGIYFPSVTG
464	486	ILAIVTTSFIYLSCIVLFGACIE
501	523	NLVIGMLAWPSPWVIVIGSFFST
564	586	WALLLTALICETGILIASLDSVA
589	611	LSMFFLMCYMFVNLACAVQTLLR
630	652	GMSLCLALMFICSWYYALFAMLI

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1806 bp
Genome contig ID	gi65535943f_69723603
PolyA signal sequence (AGTAAA,-20)	+--------+--------+----*----+---- CTTTGTTAGTAGCAGAGTAAAGTTCTATAAAATAT
Flanking genome sequence (153116 - 153165)	----+--------+--------+--------+--------+----* AAATGTTTAAGGAACTTCGTGTGCCTCATTTCCATAGAATTCAGTGGTGG

Gene/Protein Characteristic Table for mFLJ00098

Features of the cloned DNA sequence

Features of the protein sequence